SCOPe 2.03: Domain d3e5na1: 3e5n A:2-139

Lineage for d3e5na1 (3e5n A:2-139)

1. Root: SCOPe 2.03

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.30: PreATP-grasp domain [52439] (1 superfamily)
   3 layers: a/b/a; parallel or mixed beta-sheet of 4 to 6 strands
   possible rudiment form of Rossmann-fold domain

4. Superfamily c.30.1: PreATP-grasp domain [52440] (9 families)
   precedes the ATP-grasp domain common to all superfamily members, can contain a substrate-binding function

5. Family c.30.1.0: automated matches [227183] (1 protein)
   not a true family

6. Protein automated matches [226903] (19 species)
   not a true protein

7. Species Xanthomonas oryzae [TaxId:342109] [225704] (4 PDB entries)

8. Domain d3e5na1: 3e5n A:2-139 [209386]
   Other proteins in same PDB: d3e5na2
   automated match to d1ehib1

Details for d3e5na1

PDB Entry: 3e5n, 2 Å

PDB Description: crystal structure of d-alanine-d-alanine ligase from xanthomonas oryzae pv. oryzae kacc10331

PDB Compounds: (A:) D-alanine-D-alanine ligase A

SCOPe Domain Sequences for d3e5na1:

Sequence, based on SEQRES records:

>d3e5na1 c.30.1.0 (A:2-139) automated matches {Xanthomonas oryzae [TaxId: 342109]}
rkirvglifggksaehevslqsarnildaldpqrfepvligidkqgqwhvndpdsfllha
ddparialhrsgrgvallpgaqqqqlrpiqpeqalaqidvvfpivhgtlgedgslqgllr
manlpfvgsgvlgsavam

Sequence, based on observed residues (ATOM records):

>d3e5na1 c.30.1.0 (A:2-139) automated matches {Xanthomonas oryzae [TaxId: 342109]}
rkirvglifggksaehevslqsarnildaldpqrfepvligidkqgqwhvndpdsfllha
ddparialhrsgrgvallpgaqqqqlrpiqqalaqidvvfpivhgtlgedgslqgllrma
nlpfvgsgvlgsavam

Timeline for d3e5na1:

• d3e5na1 is new in SCOPe 2.03-stable
  
• d3e5na1 appears in SCOPe 2.04
  
• d3e5na1 appears in the current release, SCOPe 2.08