SCOPe 2.03: Domain d3derb2: 3der B:125-343

Lineage for d3derb2 (3der B:125-343)

1. Root: SCOPe 2.03

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.11: Enolase C-terminal domain-like [51604] (3 families)
   binds metal ion (magnesium or manganese) in conserved site inside barrel
   N-terminal alpha+beta domain is common to this superfamily

5. Family c.1.11.0: automated matches [227196] (1 protein)
   not a true family

6. Protein automated matches [226923] (45 species)
   not a true protein

7. Species Thermotoga maritima [TaxId:243274] [225440] (5 PDB entries)

8. Domain d3derb2: 3der B:125-343 [209108]
   Other proteins in same PDB: d3dera1, d3derb1, d3derc1, d3derd1
   automated match to d1jpma1
   complexed with ala, mg

Details for d3derb2

PDB Entry: 3der, 1.9 Å

PDB Description: Crystal structure of dipeptide epimerase from Thermotoga maritima complexed with L-Ala-L-Lys dipeptide

PDB Compounds: (B:) Muconate cycloisomerase

SCOPe Domain Sequences for d3derb2:

Sequence; same for both SEQRES and ATOM records:

>d3derb2 c.1.11.0 (B:125-343) automated matches {Thermotoga maritima [TaxId: 243274]}
krdeietdktvgidtvenrvkeakkifeegfrvikikvgenlkedieaveeiakvtrgak
yivdanmgytqkeavefaravyqkgidiavyeqpvrredieglkfvrfhspfpvaadesa
rtkfdvmrlvkeeavdyvniklmksgisdalaiveiaessglklmigcmgesslginqsv
hfalgtgafefhdldshlmlkeevfrgkfiqdgprmrvk

Timeline for d3derb2:

• d3derb2 is new in SCOPe 2.03-stable
  
• d3derb2 appears in SCOPe 2.04
  
• d3derb2 appears in the current release, SCOPe 2.08