Lineage for d3c5ja2 (3c5j A:82-180)

  1. Root: SCOPe 2.05
  2. 1755445Class b: All beta proteins [48724] (176 folds)
  3. 1755446Fold b.1: Immunoglobulin-like beta-sandwich [48725] (31 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 1755447Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 1758822Family b.1.1.2: C1 set domains (antibody constant domain-like) [48942] (24 proteins)
  6. 1760280Protein Class II MHC alpha chain, C-terminal domain [88618] (6 species)
  7. 1760288Species Human (Homo sapiens), HLA-DR group [TaxId:9606] [88621] (37 PDB entries)
    Uniprot P01903 28-207
    probably orthologous to the mouse I-E group
  8. 1760289Domain d3c5ja2: 3c5j A:82-180 [208794]
    Other proteins in same PDB: d3c5ja1, d3c5jb1, d3c5jb2
    automated match to d1fv1a1
    complexed with nag, so4

Details for d3c5ja2

PDB Entry: 3c5j (more details), 1.8 Å

PDB Description: crystal structure of hla dr52c
PDB Compounds: (A:) hla class II histocompatibility antigen, dr alpha chain

SCOPe Domain Sequences for d3c5ja2:

Sequence; same for both SEQRES and ATOM records: (download)

>d3c5ja2 b.1.1.2 (A:82-180) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}
itnvppevtvltnspvelrepnvlicfidkftppvvnvtwlrngkpvttgvsetvflpre
dhlfrkfhylpflpstedvydcrvehwgldepllkhwef

SCOPe Domain Coordinates for d3c5ja2:

Click to download the PDB-style file with coordinates for d3c5ja2.
(The format of our PDB-style files is described here.)

Timeline for d3c5ja2:

View in 3D
Domains from same chain:
(mouse over for more information)
d3c5ja1