Lineage for d2yzmb2 (2yzm B:115-319)

  1. Root: SCOPe 2.06
  2. 2170735Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2217268Fold d.142: ATP-grasp [56058] (2 superfamilies)
    Consists of two subdomains with different alpha+beta folds
    shares functional and structural similarities with the PIPK and protein kinase superfamilies
  4. 2217269Superfamily d.142.1: Glutathione synthetase ATP-binding domain-like [56059] (11 families) (S)
  5. 2217671Family d.142.1.0: automated matches [227184] (1 protein)
    not a true family
  6. 2217672Protein automated matches [226904] (32 species)
    not a true protein
  7. 2217789Species Thermus thermophilus HB8 [TaxId:300852] [225373] (6 PDB entries)
  8. 2217799Domain d2yzmb2: 2yzm B:115-319 [207752]
    Other proteins in same PDB: d2yzma1, d2yzmb1, d2yzmc1
    automated match to d1e4ea2
    complexed with dal

Details for d2yzmb2

PDB Entry: 2yzm (more details), 2.21 Å

PDB Description: structure of d-alanine:d-alanine ligase with substrate from thermus thermophilus hb8
PDB Compounds: (B:) d-alanine--d-alanine ligase

SCOPe Domain Sequences for d2yzmb2:

Sequence, based on SEQRES records: (download)

>d2yzmb2 d.142.1.0 (B:115-319) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
dkdlskrvlaqagvpvvpwvavrkgeppvvpfdppffvkpantgssvgisrverfqdlea
alalafrydekavvekalspvrelevgvlgnvfgeaspvgevryeapfydyetkytpgra
ellipapldpgtqetvqelalkaykvlgvrgmarvdfflaegelylnelntipgftptsm
yprlfeaggvaypellrrlvelalt

Sequence, based on observed residues (ATOM records): (download)

>d2yzmb2 d.142.1.0 (B:115-319) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
dkdlskrvlaqagvpvvpwvavrkgeppvvpfdppffvkpantgssvgisrverfqdlea
alalafrydekavvekalspvrelevgvlgnvfgeaspvgevryeapftpgraellipap
ldpgtqetvqelalkaykvlgvrgmarvdfflaegelylnelntipgftptsmyprlfea
ggvaypellrrlvelalt

SCOPe Domain Coordinates for d2yzmb2:

Click to download the PDB-style file with coordinates for d2yzmb2.
(The format of our PDB-style files is described here.)

Timeline for d2yzmb2: