Lineage for d2yzgc2 (2yzg C:115-319)

  1. Root: SCOPe 2.05
  2. 1886641Class d: Alpha and beta proteins (a+b) [53931] (381 folds)
  3. 1928430Fold d.142: ATP-grasp [56058] (2 superfamilies)
    Consists of two subdomains with different alpha+beta folds
    shares functional and structural similarities with the PIPK and protein kinase superfamilies
  4. 1928431Superfamily d.142.1: Glutathione synthetase ATP-binding domain-like [56059] (10 families) (S)
  5. 1928777Family d.142.1.0: automated matches [227184] (1 protein)
    not a true family
  6. 1928778Protein automated matches [226904] (27 species)
    not a true protein
  7. 1928872Species Thermus thermophilus HB8 [TaxId:300852] [225373] (6 PDB entries)
  8. 1928888Domain d2yzgc2: 2yzg C:115-319 [207748]
    Other proteins in same PDB: d2yzga1, d2yzgb1, d2yzgc1
    automated match to d1e4ea2

Details for d2yzgc2

PDB Entry: 2yzg (more details), 2.3 Å

PDB Description: crystal structure of d-ala:d-ala ligase from thermus thermophilus hb8
PDB Compounds: (C:) d-alanine--d-alanine ligase

SCOPe Domain Sequences for d2yzgc2:

Sequence, based on SEQRES records: (download)

>d2yzgc2 d.142.1.0 (C:115-319) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
dkdlskrvlaqagvpvvpwvavrkgeppvvpfdppffvkpantgssvgisrverfqdlea
alalafrydekavvekalspvrelevgvlgnvfgeaspvgevryeapfydyetkytpgra
ellipapldpgtqetvqelalkaykvlgvrgmarvdfflaegelylnelntipgftptsm
yprlfeaggvaypellrrlvelalt

Sequence, based on observed residues (ATOM records): (download)

>d2yzgc2 d.142.1.0 (C:115-319) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
dkdlskrvlaqagvpvvpwvavrkgeppvvpfdppffvkpantgssvgisrverfqdlea
alalafrydekavvekalspvrelevgvlgnvfgeaspvgevryeapgraellipapldp
gtqetvqelalkaykvlgvrgmarvdfflaegelylnelntipgftptsmyprlfeaggv
aypellrrlvelalt

SCOPe Domain Coordinates for d2yzgc2:

Click to download the PDB-style file with coordinates for d2yzgc2.
(The format of our PDB-style files is described here.)

Timeline for d2yzgc2: