SCOPe 2.08: Domain d2yfqa2: 2yfq A:181-421

Lineage for d2yfqa2 (2yfq A:181-421)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
   core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
   The nucleotide-binding modes of this and the next two folds/superfamilies are similar

4. Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families)

5. Family c.2.1.0: automated matches [191313] (1 protein)
   not a true family

6. Protein automated matches [190069] (319 species)
   not a true protein

7. Species Peptoniphilus asaccharolyticus [TaxId:1258] [226259] (1 PDB entry)

8. Domain d2yfqa2: 2yfq A:181-421 [207571]
   Other proteins in same PDB: d2yfqa1, d2yfqb1
   automated match to d1euza1
   complexed with so4

Details for d2yfqa2

PDB Entry: 2yfq, 2.94 Å

PDB Description: Crystal structure of Glutamate dehydrogenase from Peptoniphilus asaccharolyticus

PDB Compounds: (A:) nad-specific glutamate dehydrogenase

SCOPe Domain Sequences for d2yfqa2:

Sequence, based on SEQRES records:

>d2yfqa2 c.2.1.0 (A:181-421) automated matches {Peptoniphilus asaccharolyticus [TaxId: 1258]}
fggsegrneatgfgvavvvresakrfgikmedakiavqgfgnvgtftvknierqggkvca
iaewdrnegnyalynengidfkellaykeanktligfpgaeritdeefwtkeydiivpaa
lenvitgeraktinaklvceaangpttpegdkvlterginltpdiltnsggvlvsyyewv
qnqygyywteaeveekqeadmmkaikgvfavadeynvtlreavymyaiksidvamklrgw
y

Sequence, based on observed residues (ATOM records):

>d2yfqa2 c.2.1.0 (A:181-421) automated matches {Peptoniphilus asaccharolyticus [TaxId: 1258]}
fggsegrneatgfgvavvvresakrfgikmedakiavqgfgnvgtftvknierqggkvca
iaewdrnegnyalynengidfkellaykeanktiivpaalenvitgeraktinaklvcea
angpttpegdkvlterginltpdiltnsggvlvsyyewvqnqygyywteaeveekqeadm
mkaikgvfavadeynvtlreavymyaiksidvamklrgwy

Timeline for d2yfqa2:

• d2yfqa2 first appeared in SCOPe 2.03
  
• d2yfqa2 appears in SCOPe 2.07