SCOPe 2.06: Domain d2pzkb1: 2pzk B:1-306

Lineage for d2pzkb1 (2pzk B:1-306)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
   core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
   The nucleotide-binding modes of this and the next two folds/superfamilies are similar

4. Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families)

5. Family c.2.1.0: automated matches [191313] (1 protein)
   not a true family

6. Protein automated matches [190069] (239 species)
   not a true protein

7. Species Bordetella bronchiseptica [TaxId:518] [225344] (8 PDB entries)

8. Domain d2pzkb1: 2pzk B:1-306 [205704]
   Other proteins in same PDB: d2pzka2, d2pzkb2
   automated match to d3enkb_
   complexed with mg, nad

Details for d2pzkb1

PDB Entry: 2pzk, 2.1 Å

PDB Description: Crystal structure of the Bordetella bronchiseptica enzyme WbmG in complex with NAD

PDB Compounds: (B:) Putative nucleotide sugar epimerase/ dehydratase

SCOPe Domain Sequences for d2pzkb1:

Sequence, based on SEQRES records:

>d2pzkb1 c.2.1.0 (B:1-306) automated matches {Bordetella bronchiseptica [TaxId: 518]}
mrilitggagclgsnliehwlpqgheilvidnfatgkrevlppvaglsviegsvtdagll
erafdsfkpthvvhsaaaykdpddwaedaatnvqgsinvakaaskagvkrllnfqtalcy
grpatvpipidsptapftsygisktageaflmmsdvpvvslrlanvtgprlaigpiptfy
krlkagqkcfcsdtvrdfldmsdflaiadlslqegrptgvfnvstgeghsikevfdvvld
yvgatlaepvpvvapgaddvpsvvldpsktetefgwkakvdfkdtitgqlawydkygvtd
ifshls

Sequence, based on observed residues (ATOM records):

>d2pzkb1 c.2.1.0 (B:1-306) automated matches {Bordetella bronchiseptica [TaxId: 518]}
mrilitggagclgsnliehwlpqgheilvidnfatgkrevlppvaglsviegsvtdagll
erafdsfkpthvvhsaaaykdpddwaedaatnvqgsinvakaaskagvkrllnfqtalcy
grpatvpipidsptapftsygisktageaflmmsdvpvvslrlanvtgprlaigpiptfy
krlkagqkcfcsdtvrdfldmsdflaiadlslqegrptgvfnvstgeghsikevfdvvld
yvgaepvpvvapgaddvpsvvldpsktetefgwkakvdfkdtitgqlawydkygvtdifs
hls

Timeline for d2pzkb1:

• d2pzkb1 first appeared in SCOPe 2.03, called d2pzkb_
  
• d2pzkb1 was called d2pzkb_ in SCOPe 2.05
  
• d2pzkb1 appears in SCOPe 2.07
  
• d2pzkb1 appears in the current release, SCOPe 2.08