Lineage for d1cr9h1 (1cr9 H:1-110)

  1. Root: SCOPe 2.04
  2. 1510239Class b: All beta proteins [48724] (176 folds)
  3. 1510240Fold b.1: Immunoglobulin-like beta-sandwich [48725] (31 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 1510241Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 1510242Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 1510447Protein Immunoglobulin heavy chain variable domain, VH [88543] (21 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 1510890Species Mouse (Mus musculus), cluster 3.1 [TaxId:10090] [88551] (31 PDB entries)
    SQ NA # natural chimera; best hits are: Uniprot P01751 (Ig heavy chain V region B1-8/186-2) and Uniprot P01864 (Ig gamma-2A chain C region secreted form)
  8. 1510892Domain d1cr9h1: 1cr9 H:1-110 [20431]
    Other proteins in same PDB: d1cr9h2, d1cr9l1, d1cr9l2
    part of anti-prion Fab 3F4

Details for d1cr9h1

PDB Entry: 1cr9 (more details), 2 Å

PDB Description: crystal structure of the anti-prion fab 3f4
PDB Compounds: (H:) fab antibody heavy chain

SCOPe Domain Sequences for d1cr9h1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1cr9h1 b.1.1.1 (H:1-110) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.1 [TaxId: 10090]}

SCOPe Domain Coordinates for d1cr9h1:

Click to download the PDB-style file with coordinates for d1cr9h1.
(The format of our PDB-style files is described here.)

Timeline for d1cr9h1:

View in 3D
Domains from same chain:
(mouse over for more information)