Lineage for d1f58l1 (1f58 L:1-107)

  1. Root: SCOP 1.73
  2. 651986Class b: All beta proteins [48724] (165 folds)
  3. 651987Fold b.1: Immunoglobulin-like beta-sandwich [48725] (27 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 651988Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 651989Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (29 proteins)
  6. 652980Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 653386Species Mouse (Mus musculus), cluster 2 [TaxId:10090] [88526] (28 PDB entries)
  8. 653389Domain d1f58l1: 1f58 L:1-107 [20350]
    Other proteins in same PDB: d1f58h1, d1f58h2, d1f58l2
    part of anti-gp120 (HIV-1) Fab 58.2
    mutant

Details for d1f58l1

PDB Entry: 1f58 (more details), 2 Å

PDB Description: igg1 fab fragment (58.2) complex with 24-residue peptide (residues 308-333 of hiv-1 gp120 (mn isolate) with ala to aib substitution at position 323
PDB Compounds: (L:) protein (igg1 antibody 58.2 (light chain))

SCOP Domain Sequences for d1f58l1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1f58l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}
divltqspaslavslgqratisckasqgvdfdgasfmnwyqqkpgqppkllifaastles
giparfsgrgsgtdftlnihpveeedaatyycqqshedpltfgagtklelk

SCOP Domain Coordinates for d1f58l1:

Click to download the PDB-style file with coordinates for d1f58l1.
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Timeline for d1f58l1:

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Domains from same chain:
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d1f58l2