Lineage for d1yefh1 (1yef H:1-113)

  1. Root: SCOP 1.73
  2. 651986Class b: All beta proteins [48724] (165 folds)
  3. 651987Fold b.1: Immunoglobulin-like beta-sandwich [48725] (27 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 651988Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 651989Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (29 proteins)
  6. 652160Protein Immunoglobulin heavy chain variable domain, VH [88543] (20 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 652563Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] [88552] (148 PDB entries)
  8. 652610Domain d1yefh1: 1yef H:1-113 [20153]
    Other proteins in same PDB: d1yefh2, d1yefl1, d1yefl2
    part of Fab D2.5
    complexed with pnc, zn

Details for d1yefh1

PDB Entry: 1yef (more details), 2 Å

PDB Description: structure of igg2a fab fragment (d2.3) complexed with substrate analogue
PDB Compounds: (H:) igg2a fab fragment

SCOP Domain Sequences for d1yefh1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1yefh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}
emqlqqsgaellrpgtsvklscktsgyiftsywihwvkqrsgqglewiariypgtgstyy
nekfkgkatltadkssstaymqlstlksedsavyfctrwgfipvredyvmdywgqgtlvt
vss

SCOP Domain Coordinates for d1yefh1:

Click to download the PDB-style file with coordinates for d1yefh1.
(The format of our PDB-style files is described here.)

Timeline for d1yefh1:

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Domains from same chain:
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d1yefh2