Lineage for d1yekh1 (1yek H:1-113)

  1. Root: SCOP 1.63
  2. 218896Class b: All beta proteins [48724] (119 folds)
  3. 218897Fold b.1: Immunoglobulin-like beta-sandwich [48725] (20 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 218898Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 218899Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (15 proteins)
  6. 218958Protein Immunoglobulin (variable domains of L and H chains) [48749] (228 species)
  7. 219685Species Fab D2.3 (mouse), kappa L chain [48829] (6 PDB entries)
  8. 219692Domain d1yekh1: 1yek H:1-113 [20147]
    Other proteins in same PDB: d1yekh2, d1yekl2
    complexed with pnp, zn

Details for d1yekh1

PDB Entry: 1yek (more details), 2.1 Å

PDB Description: catalytic antibody d2.3 complex

SCOP Domain Sequences for d1yekh1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1yekh1 b.1.1.1 (H:1-113) Immunoglobulin (variable domains of L and H chains) {Fab D2.3 (mouse), kappa L chain}
emqlqqsgaellrpgtsvklscktsgyiftsywihwvkqrsgqglewiariypgtgstyy
nekfkgkatltadkssstaymqlstlksedsavyfctrwgfipvredyvmdywgqgtlvt
vss

SCOP Domain Coordinates for d1yekh1:

Click to download the PDB-style file with coordinates for d1yekh1.
(The format of our PDB-style files is described here.)

Timeline for d1yekh1:

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Domains from same chain:
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d1yekh2