SCOPe 2.06: Domain d1afvl1: 1afv L:1-112

Lineage for d1afvl1 (1afv L:1-112)

Root: SCOPe 2.06
Class b: All beta proteins [48724] (177 folds)
Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
sandwich; 7 strands in 2 sheets; greek-key
some members of the fold have additional strands
Superfamily b.1.1: Immunoglobulin [48726] (5 families)
Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)

Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species

Species Mouse (Mus musculus), cluster 2 [TaxId:10090] [88526] (28 PDB entries)

Domain d1afvl1: 1afv L:1-112 [20130]
Other proteins in same PDB: d1afva_, d1afvb_, d1afvh1, d1afvh2, d1afvk1, d1afvk2, d1afvl2, d1afvm2
part of Fab 25.3 against HIV-1 capsid protein (p24)
complexed with pb

Details for d1afvl1

PDB Entry: 1afv (more details), 3.7 Å

PDB Description: hiv-1 capsid protein (p24) complex with fab25.3

PDB Compounds: (L:) antibody fab25.3 fragment (light chain)

SCOPe Domain Sequences for d1afvl1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1afvl1 b.1.1.1 (L:1-112) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}
divltqspaslavslgqratiscrasesvdnygisfmnwfqqkpgqppklliyaasnlgs
gvparfsgsgsgtdfslnihpmeeedtamyfcqqskevpltfgagtkvelkr

SCOPe Domain Coordinates for d1afvl1:

Click to download the PDB-style file with coordinates for d1afvl1.
(The format of our PDB-style files is described here.)

Timeline for d1afvl1: