Lineage for d1yuhb1 (1yuh B:1-118)

  1. Root: SCOP 1.65
  2. 287094Class b: All beta proteins [48724] (126 folds)
  3. 287095Fold b.1: Immunoglobulin-like beta-sandwich [48725] (20 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 287096Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 287097Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (21 proteins)
  6. 287195Protein Immunoglobulin heavy chain variable domain, VH [88543] (19 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogeneous CDRs are listed as engineered species
  7. 287419Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] [88552] (118 PDB entries)
  8. 287545Domain d1yuhb1: 1yuh B:1-118 [20099]
    Other proteins in same PDB: d1yuha1, d1yuha2, d1yuhb2, d1yuhh2, d1yuhl1, d1yuhl2
    part of an anti-nitrophenol Fab
    complexed with np

Details for d1yuhb1

PDB Entry: 1yuh (more details), 3 Å

PDB Description: fab fragment

SCOP Domain Sequences for d1yuhb1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1yuhb1 b.1.1.1 (B:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2}
qvqfqqsgaelvkpgasvklsckasgytftsylmhwikqrpgrglewigridpnnvvtkf
nekfkskatltvdkpsstaymelssltsedsavyycaryaycrpmdywgqgttvtvss

SCOP Domain Coordinates for d1yuhb1:

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Timeline for d1yuhb1: