Lineage for d3sdkw_ (3sdk W:)

  1. Root: SCOPe 2.04
  2. 1631855Class d: Alpha and beta proteins (a+b) [53931] (380 folds)
  3. 1676433Fold d.153: Ntn hydrolase-like [56234] (2 superfamilies)
    4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
  4. 1676434Superfamily d.153.1: N-terminal nucleophile aminohydrolases (Ntn hydrolases) [56235] (8 families) (S)
    N-terminal residue provides two catalytic groups, nucleophile and proton donor
  5. 1676603Family d.153.1.4: Proteasome subunits [56251] (4 proteins)
  6. 1677317Protein Proteasome beta subunit (catalytic) [56252] (5 species)
  7. 1677326Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [56254] (62 PDB entries)
    The structure of yeast proteasome complexed with the proteasome activator pa26 is available from PDB (1fnt). The 1FNT entry designates protein chains by both upper case and lower case letters creating problems with its processing and presentation in SCOP; the proteasome activator pa26 structure is classified elsewhere in SCOP (a.24.8)
  8. 1677673Domain d3sdkw_: 3sdk W: [200652]
    Other proteins in same PDB: d3sdkb_, d3sdkd_, d3sdkf_, d3sdkp_, d3sdkr_, d3sdkt_
    automated match to d1rypj_
    complexed with mes, mg, p3n

Details for d3sdkw_

PDB Entry: 3sdk (more details), 2.7 Å

PDB Description: structure of yeast 20s open-gate proteasome with compound 34
PDB Compounds: (W:) Proteasome component PUP3

SCOPe Domain Sequences for d3sdkw_:

Sequence; same for both SEQRES and ATOM records: (download)

>d3sdkw_ d.153.1.4 (W:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
sdpssinggivvamtgkdcvaiacdlrlgsqslgvsnkfekifhyghvflgitglatdvt
tlnemfryktnlyklkeeraiepetftqlvssslyerrfgpyfvgpvvaginsksgkpfi
agfdligcideakdfivsgtasdqlfgmceslyepnlepedlfetisqallnaadrdals
gwgavvyiikkdevvkrylkmrqd

SCOPe Domain Coordinates for d3sdkw_:

Click to download the PDB-style file with coordinates for d3sdkw_.
(The format of our PDB-style files is described here.)

Timeline for d3sdkw_: