SCOPe 2.04: Domain d3sdkh_: 3sdk H:

Lineage for d3sdkh_ (3sdk H:)

1. Root: SCOPe 2.04

2. Class d: Alpha and beta proteins (a+b) [53931] (380 folds)

3. Fold d.153: Ntn hydrolase-like [56234] (2 superfamilies)
   4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing

4. Superfamily d.153.1: N-terminal nucleophile aminohydrolases (Ntn hydrolases) [56235] (8 families)
   N-terminal residue provides two catalytic groups, nucleophile and proton donor

5. Family d.153.1.4: Proteasome subunits [56251] (4 proteins)

6. Protein Proteasome beta subunit (catalytic) [56252] (5 species)

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [56254] (62 PDB entries)
   The structure of yeast proteasome complexed with the proteasome activator pa26 is available from PDB (1fnt). The 1FNT entry designates protein chains by both upper case and lower case letters creating problems with its processing and presentation in SCOP; the proteasome activator pa26 structure is classified elsewhere in SCOP (a.24.8)

8. Domain d3sdkh_: 3sdk H: [200642]
   Other proteins in same PDB: d3sdkb_, d3sdkd_, d3sdkf_, d3sdkp_, d3sdkr_, d3sdkt_
   automated match to d1rypi_
   complexed with mes, mg, p3n

Details for d3sdkh_

PDB Entry: 3sdk, 2.7 Å

PDB Description: structure of yeast 20s open-gate proteasome with compound 34

PDB Compounds: (H:) Proteasome component PUP1

SCOPe Domain Sequences for d3sdkh_:

Sequence; same for both SEQRES and ATOM records:

>d3sdkh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
ttivgvkfnngvviaadtrstqgpivadkncaklhrispkiwcagagtaadteavtqlig
snielhslytsreprvvsalqmlkqhlfkyqghigaylivagvdptgshlfsihahgstd
vgyylslgsgslaamavleshwkqdltkeeaiklasdaiqagiwndlgsgsnvdvcvmei
gkdaeylrnyltpnvreekqksykfprgttavlkesivnicd

Timeline for d3sdkh_:

• d3sdkh_ first appeared in SCOPe 2.03
  
• d3sdkh_ appears in SCOPe 2.05
  
• d3sdkh_ appears in the current release, SCOPe 2.08