SCOPe 2.05: Domain d3oaeb_: 3oae B:

Lineage for d3oaeb_ (3oae B:)

1. Root: SCOPe 2.05

2. Class b: All beta proteins [48724] (176 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families)

5. Family b.121.6.1: Papovaviridae-like VP [88649] (3 proteins)

6. Protein automated matches [191200] (6 species)
   not a true protein

7. Species Human papillomavirus [TaxId:10566] [189523] (1 PDB entry)

8. Domain d3oaeb_: 3oae B: [200033]
   automated match to d3oaed_
   complexed with ids, jhm

Details for d3oaeb_

PDB Entry: 3oae, 2.8 Å

PDB Description: crystal structure of hpv16 l1 pentamer bound to heparin oligosaccharides

PDB Compounds: (B:) late major capsid protein l1

SCOPe Domain Sequences for d3oaeb_:

Sequence, based on SEQRES records:

>d3oaeb_ b.121.6.1 (B:) automated matches {Human papillomavirus [TaxId: 10566]}
avvstdeyvartniyyhagtsrllavghpyfpikkpnnnkilvpkvsglqyrvfrihlpd
pnkfgfpdtsfynpdtqrlvwacvgvevgrgqplgvgisghpllnklddtenasayaana
gvdnrecismdykqtqlcligckppigehwgkgspctqvavqpgdcpplelintviqdgd
mvdtgfgamdfttlqanksevpldictsickypdyikmvsepygdslffylrreqmfvrh
lfnragtvgenvpddlyikgsgstanlassnyfptpsgsmvtsdaqifnkpywlqraqgh
nngicwgnqlfvtvvdttrstnmslcaaistsettykntnfkeylrhgeeydlqfifqlc
kitltadvmtyihsmnstiledwnggsggedplkkytfwevnlkekfsadldqfplgrkf
llqlgl

Sequence, based on observed residues (ATOM records):

>d3oaeb_ b.121.6.1 (B:) automated matches {Human papillomavirus [TaxId: 10566]}
avvstdeyvartniyyhagtsrllavghpyfpikkpnnnkilvpkvsglqyrvfrihlpd
pnkfgfpdtsfynpdtqrlvwacvgvevgrgqplgvgisghpllnklddtenasayaana
gvdnrecismdykqtqlcligckppigehwgkgspctqvavqpgdcpplelintviqdgd
mvdtgfgamdfttlqanksevpldictsickypdyikmvsepygdslffylrreqmfvrh
lfnragtvgenvpddlyikgsgstanlassnyfptpsgsmvtsdaqifnkpywlqraqgh
nngicwgnqlfvtvvdttrstnmslcaaistsettykntnfkeylrhgeeydlqfifqlc
kitltadvmtyihsmnstiledwnedplkkytfwevnlkekfsadldqfplgrkfllqlg
l

Timeline for d3oaeb_:

• d3oaeb_ first appeared in SCOPe 2.03
  
• d3oaeb_ appears in SCOPe 2.04
  
• d3oaeb_ last appears in SCOPe 2.06, called d3oaeb1