Lineage for d1mfdl1 (1mfd L:1-111)

  1. Root: SCOP 1.73
  2. 651986Class b: All beta proteins [48724] (165 folds)
  3. 651987Fold b.1: Immunoglobulin-like beta-sandwich [48725] (27 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 651988Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 651989Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (29 proteins)
  6. 653767Protein Immunoglobulin light chain lambda variable domain, VL-lambda [88534] (9 species)
    VL-lambda domains of human antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the human genome; mouse VL-lambda domains belong to a single germline family
  7. 653854Species Mouse (Mus musculus) [TaxId:10090] [88541] (33 PDB entries)
  8. 653863Domain d1mfdl1: 1mfd L:1-111 [19896]
    Other proteins in same PDB: d1mfdh1, d1mfdh2, d1mfdl2
    part of Fab SE155-4
    complexed with abe, gal, mma

Details for d1mfdl1

PDB Entry: 1mfd (more details), 2.1 Å

PDB Description: the solution structure of a trisaccharide-antibody complex: comparison of nmr measurements with a crystal structure
PDB Compounds: (L:) igg1-lambda se155-4 fab (light chain)

SCOP Domain Sequences for d1mfdl1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1mfdl1 b.1.1.1 (L:1-111) Immunoglobulin light chain lambda variable domain, VL-lambda {Mouse (Mus musculus) [TaxId: 10090]}

SCOP Domain Coordinates for d1mfdl1:

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Timeline for d1mfdl1:

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