SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2127984Fold c.60: Phosphoglycerate mutase-like [53253] (1 superfamily)
    core: 3 layers, a/b/a; mixed beta-sheet of 6 strands, order 324156; strand 5 is antiparallel to the rest
  4. 2127985Superfamily c.60.1: Phosphoglycerate mutase-like [53254] (4 families) (S)
  5. 2128215Family c.60.1.0: automated matches [196988] (1 protein)
    not a true family
  6. 2128216Protein automated matches [196989] (9 species)
    not a true protein

Species:

  1. 2128217Hafnia alvei [TaxId:569] [196990] (3 PDB entries)
    1. Domain for 4aro:
    2. Domain for 4ars:
    3. Domain for 4aru:
  2. 2128221Hydrogenobacter thermophilus [TaxId:608538] [226622] (2 PDB entries)
    1. Domains for 4ij5:
      1. 2128222Domain d4ij5a_: 4ij5 A: [223217]
        automated match to d3d8ha_
        complexed with cl, edo
      2. 2128223Domain d4ij5b_: 4ij5 B: [223218]
        automated match to d3d8ha_
        complexed with cl, edo
    2. Domains for 4ij6:
      1. 2128224Domain d4ij6a_: 4ij6 A: [223219]
        automated match to d3d8ha_
        complexed with cl, edo, sep; mutant
      2. 2128225Domain d4ij6b_: 4ij6 B: [223220]
        automated match to d3d8ha_
        complexed with cl, edo, sep; mutant
  3. 2128226Klebsiella pneumoniae [TaxId:573] [225887] (3 PDB entries)
    1. Domains for 2wnh:
      1. 2128227Domain d2wnha1: 2wnh A:13-405 [206898]
        Other proteins in same PDB: d2wnha2, d2wnha3, d2wnhb2, d2wnhb3
        automated match to d1dkla_
        complexed with gol, mg, na
      2. 2128228Domain d2wnhb1: 2wnh B:13-405 [206899]
        Other proteins in same PDB: d2wnha2, d2wnha3, d2wnhb2, d2wnhb3
        automated match to d1dkla_
        complexed with gol, mg, na
    2. Domains for 2wni:
      1. 2128233Domain d2wnia1: 2wni A:13-405 [206900]
        Other proteins in same PDB: d2wnia2, d2wnia3, d2wnib2, d2wnic2, d2wnic3, d2wnid2
        automated match to d1dkla_
        complexed with so4
      2. 2128234Domain d2wnib1: 2wni B:13-405 [206901]
        Other proteins in same PDB: d2wnia2, d2wnia3, d2wnib2, d2wnic2, d2wnic3, d2wnid2
        automated match to d1dkla_
        complexed with so4
      3. 2128235Domain d2wnic1: 2wni C:13-405 [206902]
        Other proteins in same PDB: d2wnia2, d2wnia3, d2wnib2, d2wnic2, d2wnic3, d2wnid2
        automated match to d1dkla_
        complexed with so4
      4. 2128236Domain d2wnid1: 2wni D:13-405 [206903]
        Other proteins in same PDB: d2wnia2, d2wnia3, d2wnib2, d2wnic2, d2wnic3, d2wnid2
        automated match to d1dkla_
        complexed with so4
    3. Domains for 2wu0:
      1. 2128229Domain d2wu0a1: 2wu0 A:13-405 [207014]
        Other proteins in same PDB: d2wu0a2, d2wu0a3, d2wu0b2, d2wu0c2, d2wu0c3, d2wu0d2
        automated match to d1dkla_
        complexed with so4
      2. 2128230Domain d2wu0b1: 2wu0 B:13-405 [207015]
        Other proteins in same PDB: d2wu0a2, d2wu0a3, d2wu0b2, d2wu0c2, d2wu0c3, d2wu0d2
        automated match to d1dkla_
        complexed with so4
      3. 2128231Domain d2wu0c1: 2wu0 C:13-405 [207016]
        Other proteins in same PDB: d2wu0a2, d2wu0a3, d2wu0b2, d2wu0c2, d2wu0c3, d2wu0d2
        automated match to d1dkla_
        complexed with so4
      4. 2128232Domain d2wu0d1: 2wu0 D:13-405 [207017]
        Other proteins in same PDB: d2wu0a2, d2wu0a3, d2wu0b2, d2wu0c2, d2wu0c3, d2wu0d2
        automated match to d1dkla_
        complexed with so4
  4. 2128237Lyme disease spirochete (Borrelia burgdorferi) [TaxId:139] [226360] (1 PDB entry)
  5. 2128242Mycobacterium leprae [TaxId:561304] [226361] (1 PDB entry)
  6. 2128244Mycobacterium tuberculosis [TaxId:83332] [230484] (1 PDB entry)
  7. 2128247Toxoplasma gondii [TaxId:508771] [236270] (1 PDB entry)
  8. 2128252Yersinia kristensenii [TaxId:28152] [256188] (1 PDB entry)
  9. 2286583Neisseria gonorrhoeae [TaxId:521006] [329884] (1 PDB entry)

More info for Protein automated matches from c.60.1.0: automated matches

Timeline for Protein automated matches from c.60.1.0: automated matches: