SCOPe 2.02: Domain d4dy1a_: 4dy1 A:

Lineage for d4dy1a_ (4dy1 A:)

1. Root: SCOPe 2.02

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.20: tRNA-guanine transglycosylase [51713] (1 family)

5. Family c.1.20.1: tRNA-guanine transglycosylase [51714] (3 proteins)

6. Protein automated matches [191108] (2 species)
   not a true protein

7. Species Zymomonas mobilis [TaxId:542] [189144] (11 PDB entries)

8. Domain d4dy1a_: 4dy1 A: [196699]
   automated match to d1q2ra_
   complexed with cl, zn; mutant

Details for d4dy1a_

PDB Entry: 4dy1, 2.04 Å

PDB Description: trna-guanine transglycosylase f92c c158s c281s mutant

PDB Compounds: (A:) Queuine tRNA-ribosyltransferase

SCOPe Domain Sequences for d4dy1a_:

Sequence, based on SEQRES records:

>d4dy1a_ c.1.20.1 (A:) automated matches {Zymomonas mobilis [TaxId: 542]}
rprfsfsiaaregkartgtiemkrgvirtpafmpvgtaatvkalkpetvratgadiilgn
tyhlmlrpgaeriaklgglhscmgwdrpiltdsggyqvmslssltkqseegvtfkshldg
srhmlspersieiqhllgsdivmafdestpypatpsraassmersmrwakrsrdafdsrk
eqaenaalfgiqqgsvfenlrqqsadalaeigfdgyavgglavgegqdemfrvldfsvpm
lpddkphylmgvgkpddivgavergidmfdsvlptrsgrngqaftwdgpinirnarfsed
lkpldsechcavcqkwsrayihhlirageilgamlmtehniafyqqlmqkirdsisegrf
sqfaqdfraryfa

Sequence, based on observed residues (ATOM records):

>d4dy1a_ c.1.20.1 (A:) automated matches {Zymomonas mobilis [TaxId: 542]}
rprfsfsiaaregkartgtiemkrgvirtpafmpvgtavkalkpetvratgadiilgnty
hlmlrpgaeriaklgglhscmgwdrpiltdsggyqvmslsskqseegvtfkshldgsrhm
lspersieiqhllgsdivmafdestpypatpsraassmersmrwakrsrdafdsrkeqae
naalfgiqqgsvfenlrqqsadalaeigfdgyavgglavgegqdemfrvldfsvpmlpdd
kphylmgvgkpddivgavergidmfdsvlptrsgrngqaftwdgpinirnarfsedlkpl
dsechcavcqkwsrayihhlirageilgamlmtehniafyqqlmqkirdsisegrfsqfa
qdfraryfa

Timeline for d4dy1a_:

• d4dy1a_ is new in SCOPe 2.02-stable
  
• d4dy1a_ appears in SCOPe 2.03
  
• d4dy1a_ appears in the current release, SCOPe 2.08