SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2216056Fold d.305: NAP-like [143112] (1 superfamily)
    core: central meander 4-stranded beta-sheet (order: 1234) transversed by a C-terminal helix
  4. 2216057Superfamily d.305.1: NAP-like [143113] (2 families) (S)
  5. 2216070Family d.305.1.0: automated matches [196445] (1 protein)
    not a true family
  6. 2216071Protein automated matches [196446] (3 species)
    not a true protein

Species:

  1. 2216072Malaria parasite (Plasmodium falciparum) [TaxId:5833] [196447] (2 PDB entries)
    1. Domains for 3kyp:
      1. 2216073Domain d3kypa_: 3kyp A: [199681]
        automated match to d3kypf_
      2. 2216074Domain d3kypb_: 3kyp B: [199682]
        automated match to d3kypf_
      3. 2216075Domain d3kypc_: 3kyp C: [199683]
        automated match to d3kypf_
      4. 2216076Domain d3kypd_: 3kyp D: [199684]
        automated match to d3kypf_
      5. 2216077Domain d3kype_: 3kyp E: [199685]
        automated match to d3kypf_
      6. 2216078Domain d3kypf_: 3kyp F: [196448]
        automated match to d2e50b_
    2. Domains for 5x7v:
      1. 2288197Domain d5x7vb_: 5x7v B: [331498]
        automated match to d3kypa_
      2. 2288221Domain d5x7vc_: 5x7v C: [331522]
        automated match to d3kypa_
      3. 2288224Domain d5x7vd_: 5x7v D: [331525]
        automated match to d3kypa_
      4. 2288225Domain d5x7va_: 5x7v A: [331526]
        automated match to d3kypa_
      5. 2288247Domain d5x7vf_: 5x7v F: [331548]
        automated match to d3kypa_
      6. 2288293Domain d5x7ve_: 5x7v E: [331594]
        automated match to d3kypa_
  2. 2279578Arabidopsis thaliana [TaxId:3702] [322879] (1 PDB entry)
  3. 2283318Schizosaccharomyces pombe [TaxId:284812] [326619] (2 PDB entries)
    1. Domains for 5gpk:
      1. 2283351Domain d5gpkb_: 5gpk B: [326652]
        automated match to d2e50b_
        mutant
      2. 2283416Domain d5gpka_: 5gpk A: [326717]
        automated match to d2e50b_
        mutant
    2. Domains for 5gpl:
      1. 2283319Domain d5gplb_: 5gpl B: [326620]
        automated match to d2e50b_
      2. 2283322Domain d5gpla_: 5gpl A: [326623]
        automated match to d2e50b_

More info for Protein automated matches from d.305.1.0: automated matches

Timeline for Protein automated matches from d.305.1.0: automated matches: