Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2492420Fold c.116: alpha/beta knot [75216] (1 superfamily)
    core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot
  4. 2492421Superfamily c.116.1: alpha/beta knot [75217] (9 families) (S)
    known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
    all known members have dimeric structures
  5. 2492493Family c.116.1.4: tRNA(m1G37)-methyltransferase TrmD [89629] (2 protein domains)
    fold and dimerisation mode are similar to those of the YbeA-like family; contains additional C-terminal all-alpha subdomain
  6. 2492506Protein automated matches [196235] (2 species)
    not a true protein

Species:

  1. 2492507Haemophilus influenzae [TaxId:71421] [196236] (37 PDB entries)
    1. Domain for 3axz:
    2. Domains for 4mcb:
      1. 2492510Domain d4mcba_: 4mcb A: [235592]
        automated match to d4mcca_
        protein/RNA complex; complexed with 21w, act, gol, so4
      2. 2492511Domain d4mcbb_: 4mcb B: [240533]
        automated match to d1uaja_
        protein/RNA complex; complexed with 21w, act, gol, so4
    3. Domains for 4mcc:
      1. 2492512Domain d4mcca_: 4mcc A: [227801]
        automated match to d1uaja_
        complexed with 21x
      2. 2492513Domain d4mccb_: 4mcc B: [240534]
        automated match to d1uaja_
        complexed with 21x
    4. Domain for 4mcd:
    5. Domain for 4ypw:
    6. Domain for 4ypx:
    7. Domain for 4ypy:
    8. Domain for 4ypz:
    9. Domain for 4yq0:
    10. Domain for 4yq1:
    11. Domain for 4yq2:
    12. Domain for 4yq3:
    13. Domain for 4yq4:
    14. Domain for 4yq5:
    15. Domain for 4yq6:
    16. Domain for 4yq7:
    17. Domain for 4yq8:
    18. Domain for 4yq9:
    19. Domain for 4yqa:
    20. Domain for 4yqb:
    21. Domain for 4yqc:
    22. Domain for 4yqd:
    23. Domain for 4yqg:
    24. Domain for 4yqi:
    25. Domain for 4yqj:
    26. Domain for 4yqk:
    27. Domain for 4yql:
    28. Domain for 4yqn:
    29. Domain for 4yqo:
    30. Domain for 4yqp:
    31. Domain for 4yqq:
    32. Domain for 4yqr:
    33. Domain for 4yqs:
    34. Domain for 4yqt:
    35. Domain for 4yvg:
    36. Domain for 4yvh:
    37. Domain for 5d9f:
  2. 2492547Pseudomonas aeruginosa [TaxId:208963] [343276] (2 PDB entries)
    1. Domains for 5wyq:
      1. 2492548Domain d5wyqa1: 5wyq A:5-250 [343350]
        Other proteins in same PDB: d5wyqa2, d5wyqb2
        automated match to d1p9pa_
        complexed with sam
      2. 2492549Domain d5wyqb1: 5wyq B:5-250 [343364]
        Other proteins in same PDB: d5wyqa2, d5wyqb2
        automated match to d1p9pa_
        complexed with sam
    2. Domains for 5wyr:
      1. 2492550Domain d5wyra1: 5wyr A:5-250 [343277]
        Other proteins in same PDB: d5wyra2, d5wyrb2
        automated match to d1p9pa_
        complexed with sfg
      2. 2492551Domain d5wyrb1: 5wyr B:5-250 [343344]
        Other proteins in same PDB: d5wyra2, d5wyrb2
        automated match to d1p9pa_
        complexed with sfg

More info for Protein automated matches from c.116.1.4: tRNA(m1G37)-methyltransferase TrmD

Timeline for Protein automated matches from c.116.1.4: tRNA(m1G37)-methyltransferase TrmD: