Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2525085Fold d.79: Bacillus chorismate mutase-like [55297] (9 superfamilies)
    core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest
  4. 2526336Superfamily d.79.7: OmpA-like [103088] (2 families) (S)
  5. 2526362Family d.79.7.0: automated matches [195454] (1 protein)
    not a true family
  6. 2526363Protein automated matches [195455] (13 species)
    not a true protein

Species:

  1. 2526364Acinetobacter baumannii [TaxId:470] [224937] (5 PDB entries)
    1. Domains for 3td3:
      1. 2526365Domain d3td3a1: 3td3 A:221-339 [216749]
        Other proteins in same PDB: d3td3a2, d3td3b2, d3td3c2, d3td3d2, d3td3e2, d3td3f2, d3td3g2, d3td3h2
        automated match to d2hqsc_
        complexed with gly
      2. 2526366Domain d3td3b1: 3td3 B:221-339 [216750]
        Other proteins in same PDB: d3td3a2, d3td3b2, d3td3c2, d3td3d2, d3td3e2, d3td3f2, d3td3g2, d3td3h2
        automated match to d2hqsc_
        complexed with gly
      3. 2526367Domain d3td3c1: 3td3 C:221-339 [216751]
        Other proteins in same PDB: d3td3a2, d3td3b2, d3td3c2, d3td3d2, d3td3e2, d3td3f2, d3td3g2, d3td3h2
        automated match to d2hqsc_
        complexed with gly
      4. 2526368Domain d3td3d1: 3td3 D:221-339 [216752]
        Other proteins in same PDB: d3td3a2, d3td3b2, d3td3c2, d3td3d2, d3td3e2, d3td3f2, d3td3g2, d3td3h2
        automated match to d2hqsc_
        complexed with gly
      5. 2526369Domain d3td3e1: 3td3 E:221-339 [216753]
        Other proteins in same PDB: d3td3a2, d3td3b2, d3td3c2, d3td3d2, d3td3e2, d3td3f2, d3td3g2, d3td3h2
        automated match to d2hqsc_
        complexed with gly
      6. 2526370Domain d3td3f1: 3td3 F:221-339 [216754]
        Other proteins in same PDB: d3td3a2, d3td3b2, d3td3c2, d3td3d2, d3td3e2, d3td3f2, d3td3g2, d3td3h2
        automated match to d2hqsc_
        complexed with gly
      7. 2526371Domain d3td3g1: 3td3 G:221-339 [216755]
        Other proteins in same PDB: d3td3a2, d3td3b2, d3td3c2, d3td3d2, d3td3e2, d3td3f2, d3td3g2, d3td3h2
        automated match to d2hqsc_
        complexed with gly
      8. 2526372Domain d3td3h1: 3td3 H:221-339 [216756]
        Other proteins in same PDB: d3td3a2, d3td3b2, d3td3c2, d3td3d2, d3td3e2, d3td3f2, d3td3g2, d3td3h2
        automated match to d2hqsc_
        complexed with gly
    2. Domains for 3td4:
      1. 2526373Domain d3td4a1: 3td4 A:221-339 [216757]
        Other proteins in same PDB: d3td4a2, d3td4b2, d3td4c2, d3td4d2, d3td4e2, d3td4f2, d3td4g2, d3td4h2
        automated match to d2hqsc_
        complexed with api
      2. 2526374Domain d3td4b1: 3td4 B:221-339 [216758]
        Other proteins in same PDB: d3td4a2, d3td4b2, d3td4c2, d3td4d2, d3td4e2, d3td4f2, d3td4g2, d3td4h2
        automated match to d2hqsc_
        complexed with api
      3. 2526375Domain d3td4c1: 3td4 C:221-339 [216759]
        Other proteins in same PDB: d3td4a2, d3td4b2, d3td4c2, d3td4d2, d3td4e2, d3td4f2, d3td4g2, d3td4h2
        automated match to d2hqsc_
        complexed with api
      4. 2526376Domain d3td4d1: 3td4 D:221-339 [216760]
        Other proteins in same PDB: d3td4a2, d3td4b2, d3td4c2, d3td4d2, d3td4e2, d3td4f2, d3td4g2, d3td4h2
        automated match to d2hqsc_
        complexed with api
      5. 2526377Domain d3td4e1: 3td4 E:221-339 [216761]
        Other proteins in same PDB: d3td4a2, d3td4b2, d3td4c2, d3td4d2, d3td4e2, d3td4f2, d3td4g2, d3td4h2
        automated match to d2hqsc_
        complexed with api
      6. 2526378Domain d3td4f1: 3td4 F:221-339 [216762]
        Other proteins in same PDB: d3td4a2, d3td4b2, d3td4c2, d3td4d2, d3td4e2, d3td4f2, d3td4g2, d3td4h2
        automated match to d2hqsc_
        complexed with api
      7. 2526379Domain d3td4g1: 3td4 G:221-339 [216763]
        Other proteins in same PDB: d3td4a2, d3td4b2, d3td4c2, d3td4d2, d3td4e2, d3td4f2, d3td4g2, d3td4h2
        automated match to d2hqsc_
        complexed with api
      8. 2526380Domain d3td4h1: 3td4 H:221-339 [216764]
        Other proteins in same PDB: d3td4a2, d3td4b2, d3td4c2, d3td4d2, d3td4e2, d3td4f2, d3td4g2, d3td4h2
        automated match to d2hqsc_
        complexed with api
    3. Domains for 4g4y:
      1. 2526381Domain d4g4ya1: 4g4y A:221-339 [221708]
        Other proteins in same PDB: d4g4ya2, d4g4yb2, d4g4yc2, d4g4yd2, d4g4ye2, d4g4yf2, d4g4yg2, d4g4yh2
        automated match to d2hqsc_
        complexed with ala, so4
      2. 2526382Domain d4g4yb1: 4g4y B:221-339 [221709]
        Other proteins in same PDB: d4g4ya2, d4g4yb2, d4g4yc2, d4g4yd2, d4g4ye2, d4g4yf2, d4g4yg2, d4g4yh2
        automated match to d2hqsc_
        complexed with ala, so4
      3. 2526383Domain d4g4yc1: 4g4y C:221-339 [221710]
        Other proteins in same PDB: d4g4ya2, d4g4yb2, d4g4yc2, d4g4yd2, d4g4ye2, d4g4yf2, d4g4yg2, d4g4yh2
        automated match to d2hqsc_
        complexed with ala, so4
      4. 2526384Domain d4g4yd1: 4g4y D:221-339 [221711]
        Other proteins in same PDB: d4g4ya2, d4g4yb2, d4g4yc2, d4g4yd2, d4g4ye2, d4g4yf2, d4g4yg2, d4g4yh2
        automated match to d2hqsc_
        complexed with ala, so4
      5. 2526385Domain d4g4ye1: 4g4y E:221-339 [221712]
        Other proteins in same PDB: d4g4ya2, d4g4yb2, d4g4yc2, d4g4yd2, d4g4ye2, d4g4yf2, d4g4yg2, d4g4yh2
        automated match to d2hqsc_
        complexed with ala, so4
      6. 2526386Domain d4g4yf1: 4g4y F:221-339 [221713]
        Other proteins in same PDB: d4g4ya2, d4g4yb2, d4g4yc2, d4g4yd2, d4g4ye2, d4g4yf2, d4g4yg2, d4g4yh2
        automated match to d2hqsc_
        complexed with ala, so4
      7. 2526387Domain d4g4yg1: 4g4y G:221-339 [221714]
        Other proteins in same PDB: d4g4ya2, d4g4yb2, d4g4yc2, d4g4yd2, d4g4ye2, d4g4yf2, d4g4yg2, d4g4yh2
        automated match to d2hqsc_
        complexed with ala, so4
      8. 2526388Domain d4g4yh1: 4g4y H:221-339 [221715]
        Other proteins in same PDB: d4g4ya2, d4g4yb2, d4g4yc2, d4g4yd2, d4g4ye2, d4g4yf2, d4g4yg2, d4g4yh2
        automated match to d2hqsc_
        complexed with ala, so4
    4. Domains for 4g4z:
      1. 2526397Domain d4g4za1: 4g4z A:221-339 [221716]
        Other proteins in same PDB: d4g4za2, d4g4zb2, d4g4zd2, d4g4ze2, d4g4zf2, d4g4zg2, d4g4zh2
        automated match to d2hqsc_
        complexed with dal, so4
      2. 2526398Domain d4g4zb1: 4g4z B:221-339 [221717]
        Other proteins in same PDB: d4g4za2, d4g4zb2, d4g4zd2, d4g4ze2, d4g4zf2, d4g4zg2, d4g4zh2
        automated match to d2hqsc_
        complexed with dal, so4
      3. 2526399Domain d4g4zc_: 4g4z C: [221718]
        Other proteins in same PDB: d4g4za2, d4g4zb2, d4g4zd2, d4g4ze2, d4g4zf2, d4g4zg2, d4g4zh2
        automated match to d2hqsc_
        complexed with dal, so4
      4. 2526400Domain d4g4zd1: 4g4z D:221-339 [221719]
        Other proteins in same PDB: d4g4za2, d4g4zb2, d4g4zd2, d4g4ze2, d4g4zf2, d4g4zg2, d4g4zh2
        automated match to d2hqsc_
        complexed with dal, so4
      5. 2526401Domain d4g4ze1: 4g4z E:221-339 [221720]
        Other proteins in same PDB: d4g4za2, d4g4zb2, d4g4zd2, d4g4ze2, d4g4zf2, d4g4zg2, d4g4zh2
        automated match to d2hqsc_
        complexed with dal, so4
      6. 2526402Domain d4g4zf1: 4g4z F:221-339 [221721]
        Other proteins in same PDB: d4g4za2, d4g4zb2, d4g4zd2, d4g4ze2, d4g4zf2, d4g4zg2, d4g4zh2
        automated match to d2hqsc_
        complexed with dal, so4
      7. 2526403Domain d4g4zg1: 4g4z G:221-339 [221722]
        Other proteins in same PDB: d4g4za2, d4g4zb2, d4g4zd2, d4g4ze2, d4g4zf2, d4g4zg2, d4g4zh2
        automated match to d2hqsc_
        complexed with dal, so4
      8. 2526404Domain d4g4zh1: 4g4z H:221-339 [221723]
        Other proteins in same PDB: d4g4za2, d4g4zb2, d4g4zd2, d4g4ze2, d4g4zf2, d4g4zg2, d4g4zh2
        automated match to d2hqsc_
        complexed with dal, so4
    5. Domains for 4g88:
      1. 2526389Domain d4g88a1: 4g88 A:221-339 [221760]
        Other proteins in same PDB: d4g88a2, d4g88b2, d4g88c2, d4g88d2, d4g88e2, d4g88f2, d4g88g2, d4g88h2
        automated match to d2hqsc_
        complexed with api, srt
      2. 2526390Domain d4g88b1: 4g88 B:221-339 [221761]
        Other proteins in same PDB: d4g88a2, d4g88b2, d4g88c2, d4g88d2, d4g88e2, d4g88f2, d4g88g2, d4g88h2
        automated match to d2hqsc_
        complexed with api, srt
      3. 2526391Domain d4g88c1: 4g88 C:221-339 [221762]
        Other proteins in same PDB: d4g88a2, d4g88b2, d4g88c2, d4g88d2, d4g88e2, d4g88f2, d4g88g2, d4g88h2
        automated match to d2hqsc_
        complexed with api, srt
      4. 2526392Domain d4g88d1: 4g88 D:221-339 [221763]
        Other proteins in same PDB: d4g88a2, d4g88b2, d4g88c2, d4g88d2, d4g88e2, d4g88f2, d4g88g2, d4g88h2
        automated match to d2hqsc_
        complexed with api, srt
      5. 2526393Domain d4g88e1: 4g88 E:221-339 [221764]
        Other proteins in same PDB: d4g88a2, d4g88b2, d4g88c2, d4g88d2, d4g88e2, d4g88f2, d4g88g2, d4g88h2
        automated match to d2hqsc_
        complexed with api, srt
      6. 2526394Domain d4g88f1: 4g88 F:221-339 [221765]
        Other proteins in same PDB: d4g88a2, d4g88b2, d4g88c2, d4g88d2, d4g88e2, d4g88f2, d4g88g2, d4g88h2
        automated match to d2hqsc_
        complexed with api, srt
      7. 2526395Domain d4g88g1: 4g88 G:221-339 [221766]
        Other proteins in same PDB: d4g88a2, d4g88b2, d4g88c2, d4g88d2, d4g88e2, d4g88f2, d4g88g2, d4g88h2
        automated match to d2hqsc_
        complexed with api, srt
      8. 2526396Domain d4g88h1: 4g88 H:221-339 [221767]
        Other proteins in same PDB: d4g88a2, d4g88b2, d4g88c2, d4g88d2, d4g88e2, d4g88f2, d4g88g2, d4g88h2
        automated match to d2hqsc_
        complexed with api, srt
  2. 2526405Acinetobacter baumannii [TaxId:980514] [226730] (3 PDB entries)
    1. Domain for 4g4v:
    2. Domain for 4g4w:
    3. Domain for 4g4x:
  3. 2526409Borrelia burgdorferi [TaxId:224326] [233118] (1 PDB entry)
  4. 2526411Burkholderia cenocepacia [TaxId:216591] [336981] (2 PDB entries)
    1. Domains for 5lkw:
      1. 2526415Domain d5lkwa_: 5lkw A: [337908]
        automated match to d4b5cb_
        complexed with api
      2. 2526416Domain d5lkwb_: 5lkw B: [337898]
        automated match to d4b5cb_
        complexed with api
    2. Domains for 5n2c:
      1. 2526412Domain d5n2ca_: 5n2c A: [336984]
        automated match to d4b5cb_
        complexed with act, cxs, edo, oxl
      2. 2526413Domain d5n2cb_: 5n2c B: [336982]
        automated match to d4b5cb_
        complexed with act, cxs, edo, oxl
      3. 2526414Domain d5n2cc_: 5n2c C: [337054]
        automated match to d4b5cb_
        complexed with act, cxs, edo, oxl
  5. 2526417Burkholderia pseudomallei [TaxId:28450] [234123] (1 PDB entry)
  6. 2526421Capnocytophaga gingivalis [TaxId:553178] [342874] (1 PDB entry)
  7. 2526425Escherichia coli [TaxId:536056] [259380] (1 PDB entry)
  8. 2526427Pseudomonas aeruginosa [TaxId:208964] [316357] (7 PDB entries)
    1. Domains for 4zhv:
      1. 2526429Domain d4zhva_: 4zhv A: [316386]
        automated match to d4r40b_
        complexed with so4
      2. 2526430Domain d4zhvb_: 4zhv B: [316358]
        automated match to d4r40b_
        complexed with so4
    2. Domain for 4zhw:
    3. Domain for 4zhy:
    4. Domains for 5eaz:
      1. 2526434Domain d5eaza_: 5eaz A: [317426]
        automated match to d4zhva_
        complexed with so4
      2. 2526435Domain d5eazb_: 5eaz B: [317423]
        automated match to d4zhva_
        complexed with so4
      3. 2526436Domain d5eazc_: 5eaz C: [317582]
        automated match to d4zhva_
        complexed with so4
      4. 2526437Domain d5eazd_: 5eaz D: [317498]
        automated match to d4zhva_
        complexed with so4
    5. Domains for 5eb0:
      1. 2526438Domain d5eb0a_: 5eb0 A: [317432]
        automated match to d4zhva_
        complexed with so4
      2. 2526439Domain d5eb0b_: 5eb0 B: [317429]
        automated match to d4zhva_
        complexed with so4
    6. Domains for 5eb1:
      1. 2526431Domain d5eb1b_: 5eb1 B: [317435]
        automated match to d4zhva_
        complexed with so4
      2. 2526432Domain d5eb1d_: 5eb1 D: [317422]
        automated match to d4zhva_
        complexed with so4
    7. Domains for 5y61:
      1. 2526440Domain d5y61b_: 5y61 B: [339388]
        automated match to d4zhva_
        complexed with 5gp
      2. 2526441Domain d5y61d_: 5y61 D: [339391]
        automated match to d4zhva_
        complexed with 5gp
  9. 2526442Salmonella enterica [TaxId:588858] [195456] (1 PDB entry)
  10. 2526445Salmonella enterica [TaxId:99287] [260790] (1 PDB entry)
  11. 2526448Salmonella typhimurium [TaxId:588858] [333279] (1 PDB entry)
  12. 3046414Escherichia coli [TaxId:562] [346476] (2 PDB entries)
    1. Domains for 5m38:
      1. 3046467Domain d5m38b_: 5m38 B: [346529]
        automated match to d4rhaa_
      2. 3046469Domain d5m38c_: 5m38 C: [346531]
        automated match to d4rhaa_
      3. 3046663Domain d5m38a_: 5m38 A: [346725]
        automated match to d4rhaa_
    2. Domains for 5m3g:
      1. 3046417Domain d5m3ga_: 5m3g A: [346479]
        automated match to d4rhaa_
        complexed with api, so4
      2. 3046418Domain d5m3gd_: 5m3g D: [346480]
        automated match to d4rhaa_
        complexed with api, so4
      3. 3046419Domain d5m3gb_: 5m3g B: [346481]
        automated match to d4rhaa_
        complexed with api, so4
      4. 3046533Domain d5m3gc_: 5m3g C: [346595]
        automated match to d4rhaa_
        complexed with api, so4
  13. 3052086Klebsiella pneumoniae [TaxId:573] [352148] (1 PDB entry)

More info for Protein automated matches from d.79.7.0: automated matches

Timeline for Protein automated matches from d.79.7.0: automated matches: