Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2172288Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 2177851Superfamily d.58.56: CcmK-like [143414] (2 families) (S)
    contains extra C-terminal helix; forms compact hexameric 'tiles' of hexagonal shape
  5. 2177931Family d.58.56.0: automated matches [195116] (1 protein)
    not a true family
  6. 2177932Protein automated matches [195117] (11 species)
    not a true protein

Species:

  1. 2177933Aeromonas hydrophila [TaxId:380703] [275924] (1 PDB entry)
  2. 2177937Citrobacter freundii [TaxId:546] [257443] (3 PDB entries)
    1. Domains for 3pac:
      1. 2177944Domain d3paca1: 3pac A:2-94 [306224]
        automated match to d4qiva_
      2. 2177945Domain d3paca2: 3pac A:95-184 [306225]
        automated match to d4qiva_
    2. Domains for 4p7t:
      1. 2177938Domain d4p7ta_: 4p7t A: [257444]
        automated match to d3mpya_
      2. 2177939Domain d4p7tb_: 4p7t B: [263448]
        automated match to d4ppda_
      3. 2177940Domain d4p7tc_: 4p7t C: [263449]
        automated match to d4ppda_
      4. 2177941Domain d4p7td_: 4p7t D: [263450]
        automated match to d4ppda_
      5. 2177942Domain d4p7te_: 4p7t E: [259912]
        automated match to d3mpya_
      6. 2177943Domain d4p7tf_: 4p7t F: [263451]
        automated match to d4ppda_
    3. Domains for 4p7v:
      1. 2177946Domain d4p7va_: 4p7v A: [257445]
        automated match to d3mpya_
        complexed with gol
      2. 2177947Domain d4p7vb_: 4p7v B: [263452]
        automated match to d4ppda_
        complexed with gol
      3. 2177948Domain d4p7vc_: 4p7v C: [263453]
        automated match to d4ppda_
        complexed with gol
      4. 2177949Domain d4p7vd_: 4p7v D: [259911]
        automated match to d3mpya_
        complexed with gol
      5. 2177950Domain d4p7ve_: 4p7v E: [263454]
        automated match to d4ppda_
        complexed with gol
      6. 2177951Domain d4p7vf_: 4p7v F: [263455]
        automated match to d4ppda_
        complexed with gol
  3. 2177952Clostridium difficile [TaxId:272563] [195118] (1 PDB entry)
  4. 2177956Escherichia coli K-12 [TaxId:83333] [225811] (3 PDB entries)
    1. Domains for 3i6p:
      1. 2177958Domain d3i6pa_: 3i6p A: [211534]
        automated match to d2a10d_
        complexed with so4
      2. 2177959Domain d3i6pb_: 3i6p B: [211535]
        automated match to d2a10d_
        complexed with so4
      3. 2177960Domain d3i6pc_: 3i6p C: [211536]
        automated match to d2a10d_
        complexed with so4
      4. 2177961Domain d3i6pd_: 3i6p D: [211537]
        automated match to d2a10d_
        complexed with so4
      5. 2177962Domain d3i6pe_: 3i6p E: [211538]
        automated match to d2a10d_
        complexed with so4
      6. 2177963Domain d3i6pf_: 3i6p F: [211539]
        automated match to d2a10d_
        complexed with so4
    2. Domains for 3mpw:
      1. 2177964Domain d3mpwa1: 3mpw A:2-97 [213543]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      2. 2177965Domain d3mpwb1: 3mpw B:2-97 [213544]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      3. 2177966Domain d3mpwc_: 3mpw C: [213545]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      4. 2177967Domain d3mpwd_: 3mpw D: [213546]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      5. 2177968Domain d3mpwe_: 3mpw E: [213547]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      6. 2177969Domain d3mpwf_: 3mpw F: [213548]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      7. 2177970Domain d3mpwg1: 3mpw G:2-97 [213549]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      8. 2177971Domain d3mpwh_: 3mpw H: [213550]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      9. 2177972Domain d3mpwi_: 3mpw I: [213551]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      10. 2177973Domain d3mpwj_: 3mpw J: [213552]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      11. 2177974Domain d3mpwk_: 3mpw K: [213553]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      12. 2177975Domain d3mpwl_: 3mpw L: [213554]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
    3. Domain for 3mpy:
  5. 2177976Haliangium ochraceum [TaxId:502025] [279894] (1 PDB entry)
  6. 2177985Prochlorococcus marinus [TaxId:74547] [259233] (1 PDB entry)
  7. 2177992Salmonella enterica [TaxId:702982] [257392] (1 PDB entry)
  8. 2178002Salmonella enterica [TaxId:90371] [225986] (2 PDB entries)
    1. Domains for 3n79:
      1. 2178003Domain d3n79a1: 3n79 A:2-94 [306021]
        automated match to d4qiva_
        complexed with cl, na, so4; mutant
      2. 2178004Domain d3n79a2: 3n79 A:95-184 [306022]
        automated match to d4qiva_
        complexed with cl, na, so4; mutant
    2. Domain for 3ngk:
  9. 2178006Salmonella enterica [TaxId:99287] [257522] (6 PDB entries)
    1. Domains for 4ppd:
      1. 2178016Domain d4ppda_: 4ppd A: [257523]
        Other proteins in same PDB: d4ppdb2
        automated match to d2a10d_
        complexed with gol, so4
      2. 2178017Domain d4ppdb1: 4ppd B:2-90 [263561]
        Other proteins in same PDB: d4ppdb2
        automated match to d4ppda_
        complexed with gol, so4
      3. 2178018Domain d4ppdc_: 4ppd C: [263562]
        Other proteins in same PDB: d4ppdb2
        automated match to d4ppda_
        complexed with gol, so4
      4. 2178019Domain d4ppdd_: 4ppd D: [263563]
        Other proteins in same PDB: d4ppdb2
        automated match to d4ppda_
        complexed with gol, so4
      5. 2178020Domain d4ppde_: 4ppd E: [263564]
        Other proteins in same PDB: d4ppdb2
        automated match to d4ppda_
        complexed with gol, so4
      6. 2178021Domain d4ppdf_: 4ppd F: [263565]
        Other proteins in same PDB: d4ppdb2
        automated match to d4ppda_
        complexed with gol, so4
      7. 2178022Domain d4ppdg_: 4ppd G: [263566]
        Other proteins in same PDB: d4ppdb2
        automated match to d4ppda_
        complexed with gol, so4
    2. Domains for 4qie:
      1. 2178026Domain d4qiea_: 4qie A: [273649]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
      2. 2178027Domain d4qieb_: 4qie B: [273645]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
      3. 2178028Domain d4qiec_: 4qie C: [273644]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
      4. 2178029Domain d4qied_: 4qie D: [273647]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
      5. 2178030Domain d4qiee_: 4qie E: [273651]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
      6. 2178031Domain d4qief_: 4qie F: [273652]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
      7. 2178032Domain d4qieg_: 4qie G: [273650]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
      8. 2178033Domain d4qieh1: 4qie H:2-89 [273646]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
      9. 2178034Domain d4qiei_: 4qie I: [273648]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
    3. Domains for 4qif:
      1. 2178007Domain d4qifa_: 4qif A: [269273]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
      2. 2178008Domain d4qifb_: 4qif B: [269276]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
      3. 2178009Domain d4qifc_: 4qif C: [269274]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
      4. 2178010Domain d4qifd_: 4qif D: [269275]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
      5. 2178011Domain d4qife_: 4qif E: [269279]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
      6. 2178012Domain d4qiff_: 4qif F: [269277]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
      7. 2178013Domain d4qifg_: 4qif G: [269278]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
      8. 2178014Domain d4qifh1: 4qif H:2-91 [269280]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
      9. 2178015Domain d4qifi_: 4qif I: [269285]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
    4. Domains for 4rbt:
      1. 2178023Domain d4rbta_: 4rbt A: [269841]
        automated match to d4ppda_
        complexed with so4; mutant
      2. 2178024Domain d4rbtb_: 4rbt B: [269840]
        automated match to d4ppda_
        complexed with so4; mutant
      3. 2178025Domain d4rbtc_: 4rbt C: [269839]
        automated match to d4ppda_
        complexed with so4; mutant
    5. Domains for 4rbu:
      1. 2178035Domain d4rbua_: 4rbu A: [269829]
        automated match to d4ppda_
        complexed with so4; mutant
      2. 2178036Domain d4rbub_: 4rbu B: [269828]
        automated match to d4ppda_
        complexed with so4; mutant
      3. 2178037Domain d4rbuc_: 4rbu C: [269825]
        automated match to d4ppda_
        complexed with so4; mutant
      4. 2178038Domain d4rbud_: 4rbu D: [269827]
        automated match to d4ppda_
        complexed with so4; mutant
      5. 2178039Domain d4rbue_: 4rbu E: [269826]
        automated match to d4ppda_
        complexed with so4; mutant
      6. 2178040Domain d4rbuf_: 4rbu F: [269832]
        automated match to d4ppda_
        complexed with so4; mutant
      7. 2178041Domain d4rbug_: 4rbu G: [269831]
        automated match to d4ppda_
        complexed with so4; mutant
      8. 2178042Domain d4rbuh_: 4rbu H: [269830]
        automated match to d4ppda_
        complexed with so4; mutant
      9. 2178043Domain d4rbui_: 4rbu I: [269833]
        automated match to d4ppda_
        complexed with so4; mutant
    6. Domains for 4rbv:
      1. 2178044Domain d4rbva_: 4rbv A: [269835]
        Other proteins in same PDB: d4rbvb2
        automated match to d4ppda_
        complexed with so4; mutant
      2. 2178045Domain d4rbvb1: 4rbv B:2-94 [269837]
        Other proteins in same PDB: d4rbvb2
        automated match to d4ppda_
        complexed with so4; mutant
      3. 2178046Domain d4rbvc_: 4rbv C: [269836]
        Other proteins in same PDB: d4rbvb2
        automated match to d4ppda_
        complexed with so4; mutant
      4. 2178047Domain d4rbvd_: 4rbv D: [269838]
        Other proteins in same PDB: d4rbvb2
        automated match to d4ppda_
        complexed with so4; mutant
      5. 2178048Domain d4rbve_: 4rbv E: [269843]
        Other proteins in same PDB: d4rbvb2
        automated match to d4ppda_
        complexed with so4; mutant
      6. 2178049Domain d4rbvf_: 4rbv F: [269844]
        Other proteins in same PDB: d4rbvb2
        automated match to d4ppda_
        complexed with so4; mutant
      7. 2178050Domain d4rbvg_: 4rbv G: [269842]
        Other proteins in same PDB: d4rbvb2
        automated match to d4ppda_
        complexed with so4; mutant
  10. 2275602Salmonella typhimurium [TaxId:99287] [318903] (1 PDB entry)
  11. 2285958Mycobacterium smegmatis [TaxId:246196] [329259] (1 PDB entry)

More info for Protein automated matches from d.58.56.0: automated matches

Timeline for Protein automated matches from d.58.56.0: automated matches: