SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2172288Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 2177851Superfamily d.58.56: CcmK-like [143414] (2 families) (S)
    contains extra C-terminal helix; forms compact hexameric 'tiles' of hexagonal shape
  5. 2177931Family d.58.56.0: automated matches [195116] (1 protein)
    not a true family
  6. 2177932Protein automated matches [195117] (11 species)
    not a true protein

Species:

  1. 2177933Aeromonas hydrophila [TaxId:380703] [275924] (1 PDB entry)
  2. 2177937Citrobacter freundii [TaxId:546] [257443] (3 PDB entries)
    1. Domains for 3pac:
      1. 2177944Domain d3paca1: 3pac A:2-94 [306224]
        automated match to d4qiva_
      2. 2177945Domain d3paca2: 3pac A:95-184 [306225]
        automated match to d4qiva_
    2. Domains for 4p7t:
      1. 2177938Domain d4p7ta_: 4p7t A: [257444]
        automated match to d3mpya_
      2. 2177939Domain d4p7tb_: 4p7t B: [263448]
        automated match to d4ppda_
      3. 2177940Domain d4p7tc_: 4p7t C: [263449]
        automated match to d4ppda_
      4. 2177941Domain d4p7td_: 4p7t D: [263450]
        automated match to d4ppda_
      5. 2177942Domain d4p7te_: 4p7t E: [259912]
        automated match to d3mpya_
      6. 2177943Domain d4p7tf_: 4p7t F: [263451]
        automated match to d4ppda_
    3. Domains for 4p7v:
      1. 2177946Domain d4p7va_: 4p7v A: [257445]
        automated match to d3mpya_
        complexed with gol
      2. 2177947Domain d4p7vb_: 4p7v B: [263452]
        automated match to d4ppda_
        complexed with gol
      3. 2177948Domain d4p7vc_: 4p7v C: [263453]
        automated match to d4ppda_
        complexed with gol
      4. 2177949Domain d4p7vd_: 4p7v D: [259911]
        automated match to d3mpya_
        complexed with gol
      5. 2177950Domain d4p7ve_: 4p7v E: [263454]
        automated match to d4ppda_
        complexed with gol
      6. 2177951Domain d4p7vf_: 4p7v F: [263455]
        automated match to d4ppda_
        complexed with gol
  3. 2177952Clostridium difficile [TaxId:272563] [195118] (1 PDB entry)
  4. 2177956Escherichia coli K-12 [TaxId:83333] [225811] (3 PDB entries)
    1. Domains for 3i6p:
      1. 2177958Domain d3i6pa_: 3i6p A: [211534]
        automated match to d2a10d_
        complexed with so4
      2. 2177959Domain d3i6pb_: 3i6p B: [211535]
        automated match to d2a10d_
        complexed with so4
      3. 2177960Domain d3i6pc_: 3i6p C: [211536]
        automated match to d2a10d_
        complexed with so4
      4. 2177961Domain d3i6pd_: 3i6p D: [211537]
        automated match to d2a10d_
        complexed with so4
      5. 2177962Domain d3i6pe_: 3i6p E: [211538]
        automated match to d2a10d_
        complexed with so4
      6. 2177963Domain d3i6pf_: 3i6p F: [211539]
        automated match to d2a10d_
        complexed with so4
    2. Domains for 3mpw:
      1. 2177964Domain d3mpwa1: 3mpw A:2-97 [213543]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      2. 2177965Domain d3mpwb1: 3mpw B:2-97 [213544]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      3. 2177966Domain d3mpwc_: 3mpw C: [213545]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      4. 2177967Domain d3mpwd_: 3mpw D: [213546]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      5. 2177968Domain d3mpwe_: 3mpw E: [213547]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      6. 2177969Domain d3mpwf_: 3mpw F: [213548]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      7. 2177970Domain d3mpwg1: 3mpw G:2-97 [213549]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      8. 2177971Domain d3mpwh_: 3mpw H: [213550]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      9. 2177972Domain d3mpwi_: 3mpw I: [213551]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      10. 2177973Domain d3mpwj_: 3mpw J: [213552]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      11. 2177974Domain d3mpwk_: 3mpw K: [213553]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
      12. 2177975Domain d3mpwl_: 3mpw L: [213554]
        Other proteins in same PDB: d3mpwa2, d3mpwb2, d3mpwg2
        automated match to d2a10b_
        complexed with po4
    3. Domain for 3mpy:
  5. 2177976Haliangium ochraceum [TaxId:502025] [279894] (1 PDB entry)
  6. 2177985Prochlorococcus marinus [TaxId:74547] [259233] (1 PDB entry)
  7. 2177992Salmonella enterica [TaxId:702982] [257392] (1 PDB entry)
  8. 2178002Salmonella enterica [TaxId:90371] [225986] (2 PDB entries)
    1. Domains for 3n79:
      1. 2178003Domain d3n79a1: 3n79 A:2-94 [306021]
        automated match to d4qiva_
        complexed with cl, na, so4; mutant
      2. 2178004Domain d3n79a2: 3n79 A:95-184 [306022]
        automated match to d4qiva_
        complexed with cl, na, so4; mutant
    2. Domain for 3ngk:
  9. 2178006Salmonella enterica [TaxId:99287] [257522] (6 PDB entries)
    1. Domains for 4ppd:
      1. 2178016Domain d4ppda_: 4ppd A: [257523]
        Other proteins in same PDB: d4ppdb2
        automated match to d2a10d_
        complexed with gol, so4
      2. 2178017Domain d4ppdb1: 4ppd B:2-90 [263561]
        Other proteins in same PDB: d4ppdb2
        automated match to d4ppda_
        complexed with gol, so4
      3. 2178018Domain d4ppdc_: 4ppd C: [263562]
        Other proteins in same PDB: d4ppdb2
        automated match to d4ppda_
        complexed with gol, so4
      4. 2178019Domain d4ppdd_: 4ppd D: [263563]
        Other proteins in same PDB: d4ppdb2
        automated match to d4ppda_
        complexed with gol, so4
      5. 2178020Domain d4ppde_: 4ppd E: [263564]
        Other proteins in same PDB: d4ppdb2
        automated match to d4ppda_
        complexed with gol, so4
      6. 2178021Domain d4ppdf_: 4ppd F: [263565]
        Other proteins in same PDB: d4ppdb2
        automated match to d4ppda_
        complexed with gol, so4
      7. 2178022Domain d4ppdg_: 4ppd G: [263566]
        Other proteins in same PDB: d4ppdb2
        automated match to d4ppda_
        complexed with gol, so4
    2. Domains for 4qie:
      1. 2178026Domain d4qiea_: 4qie A: [273649]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
      2. 2178027Domain d4qieb_: 4qie B: [273645]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
      3. 2178028Domain d4qiec_: 4qie C: [273644]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
      4. 2178029Domain d4qied_: 4qie D: [273647]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
      5. 2178030Domain d4qiee_: 4qie E: [273651]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
      6. 2178031Domain d4qief_: 4qie F: [273652]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
      7. 2178032Domain d4qieg_: 4qie G: [273650]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
      8. 2178033Domain d4qieh1: 4qie H:2-89 [273646]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
      9. 2178034Domain d4qiei_: 4qie I: [273648]
        Other proteins in same PDB: d4qieh2
        automated match to d2a10f_
        complexed with gol, so4; mutant
    3. Domains for 4qif:
      1. 2178007Domain d4qifa_: 4qif A: [269273]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
      2. 2178008Domain d4qifb_: 4qif B: [269276]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
      3. 2178009Domain d4qifc_: 4qif C: [269274]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
      4. 2178010Domain d4qifd_: 4qif D: [269275]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
      5. 2178011Domain d4qife_: 4qif E: [269279]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
      6. 2178012Domain d4qiff_: 4qif F: [269277]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
      7. 2178013Domain d4qifg_: 4qif G: [269278]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
      8. 2178014Domain d4qifh1: 4qif H:2-91 [269280]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
      9. 2178015Domain d4qifi_: 4qif I: [269285]
        Other proteins in same PDB: d4qifh2
        automated match to d2a10f_
        complexed with gol, k, pgo, so4, tar; mutant
    4. Domains for 4rbt:
      1. 2178023Domain d4rbta_: 4rbt A: [269841]
        automated match to d4ppda_
        complexed with so4; mutant
      2. 2178024Domain d4rbtb_: 4rbt B: [269840]
        automated match to d4ppda_
        complexed with so4; mutant
      3. 2178025Domain d4rbtc_: 4rbt C: [269839]
        automated match to d4ppda_
        complexed with so4; mutant
    5. Domains for 4rbu:
      1. 2178035Domain d4rbua_: 4rbu A: [269829]
        automated match to d4ppda_
        complexed with so4; mutant
      2. 2178036Domain d4rbub_: 4rbu B: [269828]
        automated match to d4ppda_
        complexed with so4; mutant
      3. 2178037Domain d4rbuc_: 4rbu C: [269825]
        automated match to d4ppda_
        complexed with so4; mutant
      4. 2178038Domain d4rbud_: 4rbu D: [269827]
        automated match to d4ppda_
        complexed with so4; mutant
      5. 2178039Domain d4rbue_: 4rbu E: [269826]
        automated match to d4ppda_
        complexed with so4; mutant
      6. 2178040Domain d4rbuf_: 4rbu F: [269832]
        automated match to d4ppda_
        complexed with so4; mutant
      7. 2178041Domain d4rbug_: 4rbu G: [269831]
        automated match to d4ppda_
        complexed with so4; mutant
      8. 2178042Domain d4rbuh_: 4rbu H: [269830]
        automated match to d4ppda_
        complexed with so4; mutant
      9. 2178043Domain d4rbui_: 4rbu I: [269833]
        automated match to d4ppda_
        complexed with so4; mutant
    6. Domains for 4rbv:
      1. 2178044Domain d4rbva_: 4rbv A: [269835]
        Other proteins in same PDB: d4rbvb2
        automated match to d4ppda_
        complexed with so4; mutant
      2. 2178045Domain d4rbvb1: 4rbv B:2-94 [269837]
        Other proteins in same PDB: d4rbvb2
        automated match to d4ppda_
        complexed with so4; mutant
      3. 2178046Domain d4rbvc_: 4rbv C: [269836]
        Other proteins in same PDB: d4rbvb2
        automated match to d4ppda_
        complexed with so4; mutant
      4. 2178047Domain d4rbvd_: 4rbv D: [269838]
        Other proteins in same PDB: d4rbvb2
        automated match to d4ppda_
        complexed with so4; mutant
      5. 2178048Domain d4rbve_: 4rbv E: [269843]
        Other proteins in same PDB: d4rbvb2
        automated match to d4ppda_
        complexed with so4; mutant
      6. 2178049Domain d4rbvf_: 4rbv F: [269844]
        Other proteins in same PDB: d4rbvb2
        automated match to d4ppda_
        complexed with so4; mutant
      7. 2178050Domain d4rbvg_: 4rbv G: [269842]
        Other proteins in same PDB: d4rbvb2
        automated match to d4ppda_
        complexed with so4; mutant
  10. 2275602Salmonella typhimurium [TaxId:99287] [318903] (1 PDB entry)
  11. 2285958Mycobacterium smegmatis [TaxId:246196] [329259] (1 PDB entry)

More info for Protein automated matches from d.58.56.0: automated matches

Timeline for Protein automated matches from d.58.56.0: automated matches: