SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2089689Superfamily c.1.21: Dihydropteroate synthetase-like [51717] (3 families) (S)
  5. 2089690Family c.1.21.1: Dihydropteroate synthetase [51718] (2 protein domains)
  6. 2089772Protein automated matches [194480] (6 species)
    not a true protein

Species:

  1. 2089773Bacillus anthracis [TaxId:592021] [226327] (1 PDB entry)
  2. 2089776Staphylococcus aureus [TaxId:158878] [194481] (1 PDB entry)
  3. 2089779Yersinia pestis [TaxId:632] [195817] (4 PDB entries)
    1. Domains for 3tyu:
      1. 2089786Domain d3tyua_: 3tyu A: [217102]
        Other proteins in same PDB: d3tyub2
        automated match to d3tzfb_
        complexed with pt1
      2. 2089787Domain d3tyub1: 3tyu B:1-276 [217103]
        Other proteins in same PDB: d3tyub2
        automated match to d3tzfb_
        complexed with pt1
    2. Domains for 3tyz:
      1. 2089780Domain d3tyza_: 3tyz A: [217104]
        automated match to d3tzfb_
        complexed with mg, pab, pop, xhp
      2. 2089781Domain d3tyzb_: 3tyz B: [217105]
        automated match to d3tzfb_
        complexed with mg, pab, pop, xhp
    3. Domains for 3tzf:
      1. 2089782Domain d3tzfa_: 3tzf A: [195819]
        automated match to d1aj2a_
        complexed with 08d, hh2, mg
      2. 2089783Domain d3tzfb_: 3tzf B: [195818]
        automated match to d1aj2a_
        complexed with 08d, hh2, mg
    4. Domains for 3tzn:
      1. 2089784Domain d3tzna1: 3tzn A:1-275 [217117]
        Other proteins in same PDB: d3tzna2
        automated match to d3tzfb_
      2. 2089785Domain d3tznb_: 3tzn B: [217118]
        Other proteins in same PDB: d3tzna2
        automated match to d3tzfb_
  4. 2277747Yersinia pestis [TaxId:687916] [321048] (1 PDB entry)
  5. 2286601Klebsiella pneumoniae [TaxId:272620] [329902] (1 PDB entry)
  6. 2286941Vibrio fischeri [TaxId:312309] [330242] (1 PDB entry)

More info for Protein automated matches from c.1.21.1: Dihydropteroate synthetase

Timeline for Protein automated matches from c.1.21.1: Dihydropteroate synthetase: