SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2009738Fold a.124: Phospholipase C/P1 nuclease [48536] (1 superfamily)
    multihelical
  4. 2009739Superfamily a.124.1: Phospholipase C/P1 nuclease [48537] (3 families) (S)
    duplication: all chain but the N-terminal helix forms two structural repeats
  5. 2009774Family a.124.1.0: automated matches [194368] (1 protein)
    not a true family
  6. 2009775Protein automated matches [194369] (3 species)
    not a true protein

Species:

  1. 2009776Solanum lycopersicum [TaxId:4081] [194382] (3 PDB entries)
    1. Domain for 3sng:
    2. Domains for 4dj4:
      1. 2009778Domain d4dj4a_: 4dj4 A: [194387]
        automated match to d1ak0a_
        complexed with cl, na, zn; mutant
      2. 2009779Domain d4dj4b_: 4dj4 B: [194385]
        automated match to d1ak0a_
        complexed with cl, na, zn; mutant
    3. Domain for 4jdg:
  2. 2009781Thale cress (Arabidopsis thaliana) [TaxId:3702] [196872] (5 PDB entries)
    1. Domain for 3w52:
    2. Domains for 4cwm:
      1. 2009787Domain d4cwma1: 4cwm A:1-263 [257762]
        Other proteins in same PDB: d4cwma2, d4cwmb2
        automated match to d3w52a_
        complexed with zn
      2. 2009788Domain d4cwmb1: 4cwm B:1-263 [262640]
        Other proteins in same PDB: d4cwma2, d4cwmb2
        automated match to d4cwma_
        complexed with zn
    3. Domain for 4cxo:
    4. Domain for 4cxp:
    5. Domains for 4cxv:
      1. 2009785Domain d4cxva1: 4cxv A:1-263 [266110]
        Other proteins in same PDB: d4cxva2, d4cxvb2
        automated match to d4cwma_
        protein/DNA complex; complexed with nag, po4, zn
      2. 2009786Domain d4cxvb1: 4cxv B:1-263 [266111]
        Other proteins in same PDB: d4cxva2, d4cxvb2
        automated match to d4cwma_
        protein/DNA complex; complexed with nag, po4, zn
  3. 2284280Aspergillus oryzae [TaxId:510516] [327581] (7 PDB entries)
    1. Domains for 5fb9:
      1. 2284286Domain d5fb9a_: 5fb9 A: [327587]
        automated match to d1ak0a_
        complexed with btb, na, nag, zn
      2. 2284306Domain d5fb9b_: 5fb9 B: [327607]
        automated match to d1ak0a_
        complexed with btb, na, nag, zn
    2. Domain for 5fba:
    3. Domains for 5fbb:
      1. 2284303Domain d5fbbb_: 5fbb B: [327604]
        automated match to d1ak0a_
        complexed with amp, btb, ca, ete, na, nag, po4, zn
      2. 2284344Domain d5fbba_: 5fbb A: [327645]
        automated match to d1ak0a_
        complexed with amp, btb, ca, ete, na, nag, po4, zn
    4. Domain for 5fbc:
    5. Domain for 5fbd:
    6. Domain for 5fbf:
    7. Domains for 5fbg:
      1. 2284281Domain d5fbga_: 5fbg A: [327582]
        automated match to d1ak0a_
        complexed with dcz, gng, nag, po4, zn; mutant
      2. 2284304Domain d5fbgb_: 5fbg B: [327605]
        automated match to d1ak0a_
        complexed with dcz, gng, nag, po4, zn; mutant

More info for Protein automated matches from a.124.1.0: automated matches

Timeline for Protein automated matches from a.124.1.0: automated matches: