SCOPe 2.06: Domain d3tmqd_: 3tmq D:

Lineage for d3tmqd_ (3tmq D:)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.10: Aldolase [51569] (9 families)
   Common fold covers whole protein structure

5. Family c.1.10.4: Class I DAHP synthetase [51599] (3 proteins)

6. Protein automated matches [190083] (9 species)
   not a true protein

7. Species Burkholderia pseudomallei [TaxId:320372] [189833] (3 PDB entries)

8. Domain d3tmqd_: 3tmq D: [193635]
   Other proteins in same PDB: d3tmqb2, d3tmqc2
   automated match to d3undb_
   complexed with a5p, edo, no3

Details for d3tmqd_

PDB Entry: 3tmq, 2.1 Å

PDB Description: Crystal structure of a 2-dehydro-3-deoxyphosphooctonate aldolase from Burkholderia pseudomallei in complex with D-arabinose-5-phosphate

PDB Compounds: (D:) 2-dehydro-3-deoxyphosphooctonate aldolase 2

SCOPe Domain Sequences for d3tmqd_:

Sequence, based on SEQRES records:

>d3tmqd_ c.1.10.4 (D:) automated matches {Burkholderia pseudomallei [TaxId: 320372]}
mnvaispgvtagnslpfvlfgginvlesldftldvcgeyvavtrklgipfvfkasfdkan
rssihsyrgvgldeglkifaevkarfgvpvitdvheaeqaapvaeiadvlqvpaflarqt
dlvvaiakagkpvnvkkpqfmsptqlkhvvskcgevgndrvmlcergssfgydnlvvdml
gfrqmaettggcpvifdvthslqcrdplgdasggrrrqvldlaragiavgiaglfleahp
dpdrarcdgpsalplhqlegllsqmkaiddlvkrmpaleir

Sequence, based on observed residues (ATOM records):

>d3tmqd_ c.1.10.4 (D:) automated matches {Burkholderia pseudomallei [TaxId: 320372]}
mnvaispgvtagnslpfvlfgginvlesldftldvcgeyvavtrklgipfvfkasfdkan
rssihsyrgvgldeglkifaevkarfgvpvitdvheaeqaapvaeiadvlqvpaflarqt
dlvvaiakagkpvnvkkpqfmsptqlkhvvskcgevgndrvmlcergssfgydnlvvdml
gfrqmaettggcpvifdvthslqcrrqvldlaragiavgiaglfleahpdpdrsalplhq
legllsqmkaiddlvkrmpaleir

Timeline for d3tmqd_:

• d3tmqd_ first appeared in SCOPe 2.02
  
• d3tmqd_ appears in SCOPe 2.05
  
• d3tmqd_ appears in SCOPe 2.07
  
• d3tmqd_ appears in the current release, SCOPe 2.08