Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2125386Fold c.56: Phosphorylase/hydrolase-like [53162] (8 superfamilies)
    core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops
  4. 2126575Superfamily c.56.3: Peptidyl-tRNA hydrolase-like [53178] (2 families) (S)
  5. 2126589Family c.56.3.0: automated matches [193325] (1 protein)
    not a true family
  6. 2126590Protein automated matches [193326] (10 species)
    not a true protein

Species:

  1. 2126591Acinetobacter baumannii [TaxId:575584] [196867] (13 PDB entries)
    1. Domain for 3wh4:
    2. Domain for 4fop:
    3. Domain for 4fot:
    4. Domain for 4hoy:
    5. Domain for 4iko:
    6. Domain for 4jwk:
    7. Domain for 4jx9:
    8. Domain for 4jy7:
    9. Domain for 4lwq:
    10. Domain for 4lwr:
    11. Domain for 4olj:
    12. Domain for 5y98:
    13. Domain for 5y9a:
  2. 2126603Francisella tularensis [TaxId:119856] [233012] (1 PDB entry)
  3. 2126605Mycobacterium smegmatis [TaxId:246196] [225939] (5 PDB entries)
    1. Domain for 2lgj:
    2. Domain for 2naf:
    3. Domain for 3kjz:
    4. Domain for 3kk0:
    5. Domain for 3p2j:
  4. 2126610Mycobacterium tuberculosis [TaxId:83332] [225299] (7 PDB entries)
    1. Domain for 2jrc:
    2. Domain for 2z2i:
    3. Domains for 2z2j:
      1. 2126614Domain d2z2ja_: 2z2j A: [207766]
        automated match to d4jy7a_
      2. 2126615Domain d2z2jb_: 2z2j B: [207767]
        automated match to d4jy7a_
    4. Domain for 2z2k:
    5. Domain for 3tck:
    6. Domains for 3tcn:
      1. 2126612Domain d3tcna_: 3tcn A: [216740]
        automated match to d4jy7a_
      2. 2126613Domain d3tcnb_: 3tcn B: [216741]
        automated match to d4jy7a_
    7. Domain for 3td2:
  5. 2126620Pseudomonas aeruginosa, PA01 [TaxId:208964] [193327] (9 PDB entries)
    1. Domains for 4dhw:
      1. 2126627Domain d4dhwa_: 4dhw A: [219767]
        automated match to d4jc4a_
        complexed with 0l1
      2. 2126628Domain d4dhwb_: 4dhw B: [219768]
        automated match to d4jc4a_
        complexed with 0l1
    2. Domains for 4djj:
      1. 2126632Domain d4djja_: 4djj A: [219795]
        automated match to d4jc4a_
        protein/RNA complex; complexed with pml
      2. 2126633Domain d4djjb_: 4djj B: [219796]
        automated match to d4jc4a_
        protein/RNA complex; complexed with pml
    3. Domains for 4erx:
      1. 2126625Domain d4erxa_: 4erx A: [220788]
        automated match to d4jc4a_
        protein/RNA complex; complexed with peg
      2. 2126626Domain d4erxb_: 4erx B: [220789]
        automated match to d4jc4a_
        protein/RNA complex; complexed with peg
    4. Domains for 4fno:
      1. 2126630Domain d4fnoa_: 4fno A: [221374]
        automated match to d4jc4a_
        complexed with gol, peg
      2. 2126631Domain d4fnob_: 4fno B: [221375]
        automated match to d4jc4a_
        complexed with gol, peg
    5. Domain for 4fyj:
    6. Domain for 4jc4:
    7. Domain for 4qaj:
    8. Domain for 4qbk:
    9. Domain for 4qd3:
  6. 2126634Streptococcus pyogenes [TaxId:471876] [257616] (2 PDB entries)
    1. Domains for 4q55:
      1. 2126637Domain d4q55a_: 4q55 A: [308108]
        automated match to d4qt4a_
      2. 2126638Domain d4q55b_: 4q55 B: [308109]
        automated match to d4qt4a_
    2. Domains for 4qt4:
      1. 2126635Domain d4qt4a_: 4qt4 A: [258809]
        automated match to d4jx9a_
      2. 2126636Domain d4qt4b_: 4qt4 B: [258811]
        automated match to d4jx9a_
  7. 2126639Vibrio cholerae [TaxId:579112] [268011] (1 PDB entry)
  8. 2268561Vibrio cholerae [TaxId:243277] [311867] (9 PDB entries)
    1. Domains for 4y2z:
      1. 2268562Domain d4y2zb_: 4y2z B: [311868]
        automated match to d2lgja_
        mutant
      2. 2268573Domain d4y2za_: 4y2z A: [311879]
        automated match to d2lgja_
        mutant
    2. Domains for 4z86:
      1. 2274975Domain d4z86b1: 4z86 B:3-197 [318276]
        Other proteins in same PDB: d4z86a2, d4z86b2
        automated match to d4y2zb_
        mutant
      2. 2274987Domain d4z86a1: 4z86 A:3-197 [318288]
        Other proteins in same PDB: d4z86a2, d4z86b2
        automated match to d4y2zb_
        mutant
    3. Domains for 4zxp:
      1. 2275543Domain d4zxpa1: 4zxp A:3-197 [318844]
        Other proteins in same PDB: d4zxpa2, d4zxpb2
        automated match to d4y2zb_
        complexed with flc
      2. 2275546Domain d4zxpb1: 4zxp B:3-197 [318847]
        Other proteins in same PDB: d4zxpa2, d4zxpb2
        automated match to d4y2zb_
        complexed with flc
    4. Domain for 5b6j:
    5. Domains for 5ekt:
      1. 2281562Domain d5ektb_: 5ekt B: [324863]
        automated match to d4y2zb_
        complexed with flc; mutant
      2. 2281616Domain d5ekta_: 5ekt A: [324917]
        automated match to d4y2zb_
        complexed with flc; mutant
    6. Domain for 5gvz:
    7. Domains for 5ike:
      1. 2287394Domain d5ikeb_: 5ike B: [330695]
        automated match to d4y2zb_
        mutant
      2. 2287451Domain d5ikea_: 5ike A: [330752]
        automated match to d4y2zb_
        mutant
    8. Domains for 5imb:
      1. 2287355Domain d5imba_: 5imb A: [330656]
        automated match to d4y2zb_
        mutant
      2. 2287421Domain d5imbb_: 5imb B: [330722]
        automated match to d4y2zb_
        mutant
    9. Domains for 5ivp:
      1. 2288344Domain d5ivpa_: 5ivp A: [331645]
        automated match to d4y2zb_
        complexed with flc
      2. 2288348Domain d5ivpb_: 5ivp B: [331649]
        automated match to d4y2zb_
        complexed with flc
  9. 2268768Staphylococcus aureus [TaxId:1280] [312074] (1 PDB entry)
  10. 2289587Vibrio cholerae [TaxId:345073] [332888] (1 PDB entry)

More info for Protein automated matches from c.56.3.0: automated matches

Timeline for Protein automated matches from c.56.3.0: automated matches: