Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2530962Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2544619Fold d.19: MHC antigen-recognition domain [54451] (1 superfamily)
    dimeric
  4. 2544620Superfamily d.19.1: MHC antigen-recognition domain [54452] (2 families) (S)
  5. 2544621Family d.19.1.1: MHC antigen-recognition domain [54453] (13 proteins)
  6. 2545619Protein automated matches [191280] (6 species)
    not a true protein

Species:

  1. 2545620Ailuropoda melanoleuca [TaxId:9646] [405006] (1 PDB entry)
  2. 2545623Cat (Felis catus) [TaxId:9685] [342902] (2 PDB entries)
    1. Domain for 5xmf:
    2. Domain for 5xmm:
  3. 2545626Cow (Bos taurus) [TaxId:9913] [225910] (2 PDB entries)
    1. Domain for 2xfx:
    2. Domains for 3l9r:
      1. 2545628Domain d3l9ra1: 3l9r A:3-183 [199717]
        Other proteins in same PDB: d3l9ra2, d3l9ra3, d3l9rb_, d3l9rc2, d3l9rc3, d3l9rd_, d3l9re2, d3l9re3, d3l9rf_, d3l9rg2, d3l9rg3, d3l9rh_
        automated match to d1gzpa2
        complexed with cl, gol, l9q, l9r, nag
      2. 2545629Domain d3l9rc1: 3l9r C:3-183 [199719]
        Other proteins in same PDB: d3l9ra2, d3l9ra3, d3l9rb_, d3l9rc2, d3l9rc3, d3l9rd_, d3l9re2, d3l9re3, d3l9rf_, d3l9rg2, d3l9rg3, d3l9rh_
        automated match to d1gzpa2
        complexed with cl, gol, l9q, l9r, nag
      3. 2545630Domain d3l9re1: 3l9r E:3-183 [199721]
        Other proteins in same PDB: d3l9ra2, d3l9ra3, d3l9rb_, d3l9rc2, d3l9rc3, d3l9rd_, d3l9re2, d3l9re3, d3l9rf_, d3l9rg2, d3l9rg3, d3l9rh_
        automated match to d1gzpa2
        complexed with cl, gol, l9q, l9r, nag
      4. 2545631Domain d3l9rg1: 3l9r G:3-183 [199723]
        Other proteins in same PDB: d3l9ra2, d3l9ra3, d3l9rb_, d3l9rc2, d3l9rc3, d3l9rd_, d3l9re2, d3l9re3, d3l9rf_, d3l9rg2, d3l9rg3, d3l9rh_
        automated match to d1gzpa2
        complexed with cl, gol, l9q, l9r, nag
  4. 2545632Human (Homo sapiens) [TaxId:9606] [189896] (33 PDB entries)
    1. Domains for 2bc4:
      1. 2545667Domain d2bc4a1: 2bc4 A:13-96 [203578]
        Other proteins in same PDB: d2bc4a2, d2bc4b2, d2bc4c2, d2bc4c3, d2bc4d2
        automated match to d1hdma2
        complexed with bma, cl, ndg
      2. 2545668Domain d2bc4b1: 2bc4 B:3-93 [203580]
        Other proteins in same PDB: d2bc4a2, d2bc4b2, d2bc4c2, d2bc4c3, d2bc4d2
        automated match to d1hdmb2
        complexed with bma, cl, ndg
      3. 2545669Domain d2bc4c1: 2bc4 C:12-96 [203582]
        Other proteins in same PDB: d2bc4a2, d2bc4b2, d2bc4c2, d2bc4c3, d2bc4d2
        automated match to d1hdma2
        complexed with bma, cl, ndg
      4. 2545670Domain d2bc4d1: 2bc4 D:3-93 [203584]
        Other proteins in same PDB: d2bc4a2, d2bc4b2, d2bc4c2, d2bc4c3, d2bc4d2
        automated match to d1hdmb2
        complexed with bma, cl, ndg
    2. Domains for 2fse:
      1. 2545691Domain d2fsea2: 2fse A:4-81 [134018]
        Other proteins in same PDB: d2fsea1, d2fseb1, d2fsec1, d2fsed1
        automated match to d4h25a1
      2. 2545692Domain d2fsec2: 2fse C:4-81 [134022]
        Other proteins in same PDB: d2fsea1, d2fseb1, d2fsec1, d2fsed1
        automated match to d4h25a1
    3. Domains for 2wbj:
      1. 2545685Domain d2wbjb1: 2wbj B:3-92 [244086]
        Other proteins in same PDB: d2wbja1, d2wbja2, d2wbjb2, d2wbjc1, d2wbjc2, d2wbje1, d2wbje2, d2wbjf2, d2wbjg1, d2wbjg2
        automated match to d1klub2
        complexed with nag, so4
      2. 2545686Domain d2wbjf1: 2wbj F:3-92 [244092]
        Other proteins in same PDB: d2wbja1, d2wbja2, d2wbjb2, d2wbjc1, d2wbjc2, d2wbje1, d2wbje2, d2wbjf2, d2wbjg1, d2wbjg2
        automated match to d1klub2
        complexed with nag, so4
    4. Domain for 3bw9:
    5. Domain for 3bwa:
    6. Domain for 3gsn:
    7. Domain for 3gso:
    8. Domain for 3gsq:
    9. Domain for 3gsr:
    10. Domain for 3gsu:
    11. Domain for 3gsv:
    12. Domain for 3gsw:
    13. Domain for 3gsx:
    14. Domains for 3jtc:
      1. 2545635Domain d3jtca_: 3jtc A: [178819]
        Other proteins in same PDB: d3jtcc_, d3jtcd_
        automated match to d1lqvb_
        complexed with ca, mg, nag, ndg, pty
      2. 2545636Domain d3jtcb_: 3jtc B: [178820]
        Other proteins in same PDB: d3jtcc_, d3jtcd_
        automated match to d1lqvb_
        complexed with ca, mg, nag, ndg, pty
    15. Domain for 3pl6:
    16. Domain for 4aen:
    17. Domains for 4fqx:
      1. 2545682Domain d4fqxb1: 4fqx B:1-92 [221468]
        Other proteins in same PDB: d4fqxa1, d4fqxa2, d4fqxb2, d4fqxb3, d4fqxc2, d4fqxc3, d4fqxd2
        automated match to d1klub2
        complexed with nag
      2. 2545683Domain d4fqxc1: 4fqx C:15-96 [221470]
        Other proteins in same PDB: d4fqxa1, d4fqxa2, d4fqxb2, d4fqxb3, d4fqxc2, d4fqxc3, d4fqxd2
        automated match to d1hdma2
        complexed with nag
      3. 2545684Domain d4fqxd1: 4fqx D:3-93 [221472]
        Other proteins in same PDB: d4fqxa1, d4fqxa2, d4fqxb2, d4fqxb3, d4fqxc2, d4fqxc3, d4fqxd2
        automated match to d1hdmb2
        complexed with nag
    18. Domains for 4grl:
      1. 2545680Domain d4grla1: 4grl A:-1-81 [234508]
        Other proteins in same PDB: d4grla2, d4grlb2, d4grlc1, d4grlc2
        automated match to d4maya1
        complexed with nag
      2. 2545681Domain d4grlb1: 4grl B:3-94 [234510]
        Other proteins in same PDB: d4grla2, d4grlb2, d4grlc1, d4grlc2
        automated match to d4mayb1
        complexed with nag
    19. Domains for 4h25:
      1. 2545647Domain d4h25b1: 4h25 B:6-92 [234610]
        Other proteins in same PDB: d4h25a1, d4h25a2, d4h25b2, d4h25b3, d4h25b4, d4h25d1, d4h25d2, d4h25e2, d4h25e3, d4h25e4
        automated match to d4h26e1
        complexed with ipa
      2. 2545648Domain d4h25e1: 4h25 E:6-92 [234612]
        Other proteins in same PDB: d4h25a1, d4h25a2, d4h25b2, d4h25b3, d4h25b4, d4h25d1, d4h25d2, d4h25e2, d4h25e3, d4h25e4
        automated match to d4h26e1
        complexed with ipa
    20. Domains for 4h26:
      1. 2545652Domain d4h26b1: 4h26 B:6-92 [234614]
        Other proteins in same PDB: d4h26a1, d4h26a2, d4h26b2, d4h26b3, d4h26b4, d4h26d1, d4h26d2, d4h26e2, d4h26e3, d4h26e4
        automated match to d4h26e1
      2. 2545653Domain d4h26e1: 4h26 E:6-92 [228344]
        Other proteins in same PDB: d4h26a1, d4h26a2, d4h26b2, d4h26b3, d4h26b4, d4h26d1, d4h26d2, d4h26e2, d4h26e3, d4h26e4
        automated match to d2sebb2
    21. Domains for 4may:
      1. 2545657Domain d4maya1: 4may A:0-81 [228549]
        Other proteins in same PDB: d4maya2, d4mayb2, d4mayc1, d4mayc2
        automated match to d1uvqa2
        complexed with so4
      2. 2545658Domain d4mayb1: 4may B:3-94 [228556]
        Other proteins in same PDB: d4maya2, d4mayb2, d4mayc1, d4mayc2
        automated match to d1jk8b2
        complexed with so4
    22. Domains for 4n0f:
      1. 2545687Domain d4n0fa1: 4n0f A:4-176 [253842]
        Other proteins in same PDB: d4n0fa2, d4n0fb_, d4n0fd1, d4n0fd2, d4n0fd3, d4n0fe2, d4n0ff_, d4n0fg1, d4n0fg2, d4n0fg3, d4n0fh2, d4n0fi_, d4n0fj1, d4n0fj2, d4n0fj3, d4n0fk2, d4n0fl_, d4n0fm1, d4n0fm2, d4n0fm3
        automated match to d1exua2
      2. 2545688Domain d4n0fe1: 4n0f E:4-176 [253848]
        Other proteins in same PDB: d4n0fa2, d4n0fb_, d4n0fd1, d4n0fd2, d4n0fd3, d4n0fe2, d4n0ff_, d4n0fg1, d4n0fg2, d4n0fg3, d4n0fh2, d4n0fi_, d4n0fj1, d4n0fj2, d4n0fj3, d4n0fk2, d4n0fl_, d4n0fm1, d4n0fm2, d4n0fm3
        automated match to d1exua2
      3. 2545689Domain d4n0fh1: 4n0f H:4-176 [253854]
        Other proteins in same PDB: d4n0fa2, d4n0fb_, d4n0fd1, d4n0fd2, d4n0fd3, d4n0fe2, d4n0ff_, d4n0fg1, d4n0fg2, d4n0fg3, d4n0fh2, d4n0fi_, d4n0fj1, d4n0fj2, d4n0fj3, d4n0fk2, d4n0fl_, d4n0fm1, d4n0fm2, d4n0fm3
        automated match to d1exua2
      4. 2545690Domain d4n0fk1: 4n0f K:4-176 [253860]
        Other proteins in same PDB: d4n0fa2, d4n0fb_, d4n0fd1, d4n0fd2, d4n0fd3, d4n0fe2, d4n0ff_, d4n0fg1, d4n0fg2, d4n0fg3, d4n0fh2, d4n0fi_, d4n0fj1, d4n0fj2, d4n0fj3, d4n0fk2, d4n0fl_, d4n0fm1, d4n0fm2, d4n0fm3
        automated match to d1exua2
    23. Domains for 5iue:
      1. 2545675Domain d5iuea1: 5iue A:2-181 [335377]
        Other proteins in same PDB: d5iuea2, d5iueb_, d5iuee2, d5iuef_, d5iueg2, d5iueh_, d5iuei2, d5iuej_
        automated match to d1efxa2
        complexed with nag
      2. 2545676Domain d5iuee1: 5iue E:2-181 [335447]
        Other proteins in same PDB: d5iuea2, d5iueb_, d5iuee2, d5iuef_, d5iueg2, d5iueh_, d5iuei2, d5iuej_
        automated match to d1efxa2
        complexed with nag
      3. 2545677Domain d5iueg1: 5iue G:2-181 [335419]
        Other proteins in same PDB: d5iuea2, d5iueb_, d5iuee2, d5iuef_, d5iueg2, d5iueh_, d5iuei2, d5iuej_
        automated match to d1efxa2
        complexed with nag
      4. 2545678Domain d5iuei1: 5iue I:1-181 [335568]
        Other proteins in same PDB: d5iuea2, d5iueb_, d5iuee2, d5iuef_, d5iueg2, d5iueh_, d5iuei2, d5iuej_
        automated match to d1efxa2
        complexed with nag
    24. Domains for 5ujt:
      1. 2545649Domain d5ujtb1: 5ujt B:3-94 [343318]
        Other proteins in same PDB: d5ujta1, d5ujta2, d5ujtb2, d5ujtd1, d5ujtd2, d5ujte2, d5ujtg1, d5ujtg2, d5ujth2
        automated match to d1jk8b2
        complexed with nag
      2. 2545650Domain d5ujte1: 5ujt E:3-94 [343240]
        Other proteins in same PDB: d5ujta1, d5ujta2, d5ujtb2, d5ujtd1, d5ujtd2, d5ujte2, d5ujtg1, d5ujtg2, d5ujth2
        automated match to d1jk8b2
        complexed with nag
      3. 2545651Domain d5ujth1: 5ujt H:3-94 [343274]
        Other proteins in same PDB: d5ujta1, d5ujta2, d5ujtb2, d5ujtd1, d5ujtd2, d5ujte2, d5ujtg1, d5ujtg2, d5ujth2
        automated match to d1jk8b2
        complexed with nag
    25. Domain for 5xs3:
    26. Domain for 6cug:
    27. Domain for 6d64:
    28. Domain for 6l9k:
    29. Domains for 6l9l:
      1. 2545654Domain d6l9la_: 6l9l A: [395101]
        Other proteins in same PDB: d6l9lc1, d6l9lc2, d6l9ld1, d6l9ld2, d6l9lg1, d6l9lg2, d6l9lh1, d6l9lh2
        automated match to d1tmca_
      2. 2545655Domain d6l9le_: 6l9l E: [395106]
        Other proteins in same PDB: d6l9lc1, d6l9lc2, d6l9ld1, d6l9ld2, d6l9lg1, d6l9lg2, d6l9lh1, d6l9lh2
        automated match to d1tmca_
    30. Domains for 6l9m:
      1. 2545663Domain d6l9ma1: 6l9m A:1-182 [395240]
        Other proteins in same PDB: d6l9ma2, d6l9mb_, d6l9md2, d6l9me_, d6l9mg2, d6l9mh_, d6l9mj2, d6l9mk_
        automated match to d1kjva2
      2. 2545664Domain d6l9md1: 6l9m D:1-182 [395133]
        Other proteins in same PDB: d6l9ma2, d6l9mb_, d6l9md2, d6l9me_, d6l9mg2, d6l9mh_, d6l9mj2, d6l9mk_
        automated match to d1kjva2
      3. 2545665Domain d6l9mg1: 6l9m G:1-182 [395293]
        Other proteins in same PDB: d6l9ma2, d6l9mb_, d6l9md2, d6l9me_, d6l9mg2, d6l9mh_, d6l9mj2, d6l9mk_
        automated match to d1kjva2
      4. 2545666Domain d6l9mj1: 6l9m J:1-182 [395112]
        Other proteins in same PDB: d6l9ma2, d6l9mb_, d6l9md2, d6l9me_, d6l9mg2, d6l9mh_, d6l9mj2, d6l9mk_
        automated match to d1kjva2
    31. Domains for 6l9n:
      1. 2545659Domain d6l9na1: 6l9n A:1-182 [395127]
        Other proteins in same PDB: d6l9na2, d6l9nb_, d6l9nd2, d6l9ne_, d6l9ng2, d6l9nh_, d6l9nj2, d6l9nk_
        automated match to d1kjva2
      2. 2545660Domain d6l9nd1: 6l9n D:1-182 [395205]
        Other proteins in same PDB: d6l9na2, d6l9nb_, d6l9nd2, d6l9ne_, d6l9ng2, d6l9nh_, d6l9nj2, d6l9nk_
        automated match to d1kjva2
      3. 2545661Domain d6l9ng1: 6l9n G:1-182 [395119]
        Other proteins in same PDB: d6l9na2, d6l9nb_, d6l9nd2, d6l9ne_, d6l9ng2, d6l9nh_, d6l9nj2, d6l9nk_
        automated match to d1kjva2
      4. 2545662Domain d6l9nj1: 6l9n J:1-182 [395214]
        Other proteins in same PDB: d6l9na2, d6l9nb_, d6l9nd2, d6l9ne_, d6l9ng2, d6l9nh_, d6l9nj2, d6l9nk_
        automated match to d1kjva2
    32. Domain for 6la6:
    33. Domain for 6la7:
  5. 2545693Macaca mulatta [TaxId:9544] [384001] (4 PDB entries)
    1. Domains for 6lah:
      1. 2545698Domain d6laha1: 6lah A:0-181 [384002]
        Other proteins in same PDB: d6laha2, d6lahb_, d6lahc2, d6lahd_
        automated match to d1xh3a2
        complexed with edo, ekg, zn
      2. 2545699Domain d6lahc1: 6lah C:0-181 [384034]
        Other proteins in same PDB: d6laha2, d6lahb_, d6lahc2, d6lahd_
        automated match to d1xh3a2
        complexed with edo, ekg, zn
    2. Domains for 6lam:
      1. 2545696Domain d6lama1: 6lam A:0-181 [384792]
        Other proteins in same PDB: d6lama2, d6lamb_, d6lamc2, d6lamd_
        automated match to d1xh3a2
        complexed with cl, edo, ekg, trs, zn
      2. 2545697Domain d6lamc1: 6lam C:0-181 [384687]
        Other proteins in same PDB: d6lama2, d6lamb_, d6lamc2, d6lamd_
        automated match to d1xh3a2
        complexed with cl, edo, ekg, trs, zn
    3. Domains for 6lb2:
      1. 2545694Domain d6lb2a1: 6lb2 A:0-181 [384084]
        Other proteins in same PDB: d6lb2a2, d6lb2b_, d6lb2c2, d6lb2d_
        automated match to d1xh3a2
        complexed with edo, ekg, zn
      2. 2545695Domain d6lb2c1: 6lb2 C:0-181 [384014]
        Other proteins in same PDB: d6lb2a2, d6lb2b_, d6lb2c2, d6lb2d_
        automated match to d1xh3a2
        complexed with edo, ekg, zn
    4. Domain for 6lt6:
  6. 2545701Mouse (Mus musculus) [TaxId:10090] [225821] (8 PDB entries)
    1. Domain for 1zhn:
    2. Domains for 2fse:
      1. 2545713Domain d2fseb2: 2fse B:5-92 [134020]
        Other proteins in same PDB: d2fsea1, d2fseb1, d2fsec1, d2fsed1
        automated match to d1klub2
      2. 2545714Domain d2fsed2: 2fse D:4-92 [134024]
        Other proteins in same PDB: d2fsea1, d2fseb1, d2fsec1, d2fsed1
        automated match to d1klub2
    3. Domain for 3mbe:
    4. Domains for 4mng:
      1. 2545711Domain d4mnga1: 4mng A:6-183 [253807]
        Other proteins in same PDB: d4mnga2, d4mnga3, d4mngb_, d4mngc2, d4mngc3, d4mngd_, d4mnge1, d4mnge2, d4mngf1, d4mngf2
        automated match to d3hujc1
        complexed with cis, nag
      2. 2545712Domain d4mngc1: 4mng C:6-183 [253810]
        Other proteins in same PDB: d4mnga2, d4mnga3, d4mngb_, d4mngc2, d4mngc3, d4mngd_, d4mnge1, d4mnge2, d4mngf1, d4mngf2
        automated match to d3hujc1
        complexed with cis, nag
    5. Domain for 4mq7:
    6. Domains for 5dmk:
      1. 2545705Domain d5dmka1: 5dmk A:2-84 [278675]
        Other proteins in same PDB: d5dmka2, d5dmkc2, d5dmke2, d5dmkg2
        automated match to d1es0a2
        complexed with flc
      2. 2545706Domain d5dmkc1: 5dmk C:1-84 [278681]
        Other proteins in same PDB: d5dmka2, d5dmkc2, d5dmke2, d5dmkg2
        automated match to d1es0a2
        complexed with flc
      3. 2545707Domain d5dmke1: 5dmk E:1-84 [278677]
        Other proteins in same PDB: d5dmka2, d5dmkc2, d5dmke2, d5dmkg2
        automated match to d1es0a2
        complexed with flc
      4. 2545708Domain d5dmkg1: 5dmk G:1-84 [278679]
        Other proteins in same PDB: d5dmka2, d5dmkc2, d5dmke2, d5dmkg2
        automated match to d1es0a2
        complexed with flc
    7. Domain for 6blr:
    8. Domain for 6cw9:

More info for Protein automated matches from d.19.1.1: MHC antigen-recognition domain

Timeline for Protein automated matches from d.19.1.1: MHC antigen-recognition domain: