Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2172288Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 2176945Superfamily d.58.29: Nucleotide cyclase [55073] (3 families) (S)
    common fold is elaborated with additional secondary structures
  5. 2177026Family d.58.29.0: automated matches [191671] (1 protein)
    not a true family
  6. 2177027Protein automated matches [191274] (12 species)
    not a true protein

Species:

  1. 2177028Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [225538] (1 PDB entry)
  2. 2177031Human (Homo sapiens) [TaxId:9606] [225808] (3 PDB entries)
    1. Domains for 2wz1:
      1. 2177032Domain d2wz1a_: 2wz1 A: [207062]
        automated match to d2gvzb1
        complexed with edo
      2. 2177033Domain d2wz1b_: 2wz1 B: [207063]
        automated match to d2gvzb1
        complexed with edo
    2. Domains for 3uvj:
      1. 2177034Domain d3uvjb_: 3uvj B: [217535]
        automated match to d2gvzb1
        complexed with edo, gol
      2. 2177035Domain d3uvjd_: 3uvj D: [217536]
        automated match to d2gvzb1
        complexed with edo, gol
    3. Domain for 4ni2:
  3. 2177037Mycobacterium avium [TaxId:1764] [276597] (3 PDB entries)
    1. Domains for 4wp8:
      1. 2177040Domain d4wp8a1: 4wp8 A:54-217 [309905]
        Other proteins in same PDB: d4wp8a2, d4wp8b2
        automated match to d4wp9a_
        complexed with cl, mn, zda
      2. 2177041Domain d4wp8b_: 4wp8 B:54-217 [309908]
        Other proteins in same PDB: d4wp8a2, d4wp8b2
        automated match to d4wp9a_
        complexed with cl, mn, zda
    2. Domains for 4wp9:
      1. 2177038Domain d4wp9a1: 4wp9 A:54-219 [276599]
        Other proteins in same PDB: d4wp9a2, d4wp9b2
        automated match to d2w01c_
        complexed with ca, mg, zda
      2. 2177039Domain d4wp9b1: 4wp9 B:54-217 [276598]
        Other proteins in same PDB: d4wp9a2, d4wp9b2
        automated match to d2w01c_
        complexed with ca, mg, zda
    3. Domains for 4wpa:
      1. 2177042Domain d4wpaa1: 4wpa A:54-217 [309909]
        Other proteins in same PDB: d4wpaa2, d4wpab2
        automated match to d4wp9a_
        complexed with ca, ppv
      2. 2177043Domain d4wpab1: 4wpa B:54-217 [309911]
        Other proteins in same PDB: d4wpaa2, d4wpab2
        automated match to d4wp9a_
        complexed with ca, ppv
  4. 2177044Mycobacterium tuberculosis [225049] (4 PDB entries)
    1. Domain for 1yk9:
    2. Domain for 4p2f:
    3. Domains for 4p2m:
      1. 2177048Domain d4p2ma_: 4p2m A: [260539]
        automated match to d1yk9a_
        complexed with peg, so4
      2. 2177049Domain d4p2mb_: 4p2m B: [259684]
        automated match to d1yk9a_
        complexed with peg, so4
    4. Domain for 4p2x:
  5. 2177050Mycobacterium tuberculosis [TaxId:1773] [259679] (1 PDB entry)
  6. 2177052Mycobacterium tuberculosis [TaxId:83331] [311197] (1 PDB entry)
  7. 2177057Mycobacterium tuberculosis [TaxId:83332] [311195] (1 PDB entry)
  8. 2177062Pseudomonas aeruginosa [TaxId:287] [189865] (1 PDB entry)
  9. 2177065Ruegeria pomeroyi [TaxId:246200] [196436] (1 PDB entry)
  10. 2177069Synechocystis sp. [TaxId:1148] [196081] (1 PDB entry)
  11. 2277648Mycobacterium avium [TaxId:1391991] [320949] (4 PDB entries)
    1. Domains for 5d0e:
      1. 2277653Domain d5d0ea1: 5d0e A:106-270 [320954]
        Other proteins in same PDB: d5d0ea2, d5d0eb2
        automated match to d2w01c_
        complexed with ca, cl, gtp
      2. 2277925Domain d5d0eb1: 5d0e B:106-271 [321226]
        Other proteins in same PDB: d5d0ea2, d5d0eb2
        automated match to d2w01c_
        complexed with ca, cl, gtp
    2. Domains for 5d0g:
      1. 2277649Domain d5d0gb1: 5d0g B:106-269 [320950]
        Other proteins in same PDB: d5d0ga2, d5d0gb2
        automated match to d2w01b_
        complexed with ca, gtp; mutant
      2. 2277681Domain d5d0ga1: 5d0g A:106-269 [320982]
        Other proteins in same PDB: d5d0ga2, d5d0gb2
        automated match to d2w01b_
        complexed with ca, gtp; mutant
    3. Domains for 5d0h:
      1. 2277665Domain d5d0ha1: 5d0h A:106-270 [320966]
        Other proteins in same PDB: d5d0ha2, d5d0hb2
        automated match to d2w01b_
        complexed with atp, ca; mutant
      2. 2277710Domain d5d0hb1: 5d0h B:106-269 [321011]
        Other proteins in same PDB: d5d0ha2, d5d0hb2
        automated match to d2w01b_
        complexed with atp, ca; mutant
    4. Domains for 5d15:
      1. 2277693Domain d5d15b1: 5d15 B:106-271 [320994]
        Other proteins in same PDB: d5d15a2, d5d15b2
        automated match to d2w01c_
        complexed with atp, ca, edo
      2. 2277770Domain d5d15a1: 5d15 A:106-271 [321071]
        Other proteins in same PDB: d5d15a2, d5d15b2
        automated match to d2w01c_
        complexed with atp, ca, edo
  12. 2298466Blastocladiella emersonii [TaxId:4808] [341767] (3 PDB entries)
    1. Domain for 6ao9:
    2. Domain for 6aoa:
    3. Domains for 6aob:
      1. 2298469Domain d6aoba1: 6aob A:442-626 [341770]
        Other proteins in same PDB: d6aoba2
        automated match to d4p2xb_
        complexed with mn, tla
      2. 2298472Domain d6aobb_: 6aob B: [341773]
        Other proteins in same PDB: d6aoba2
        automated match to d4p2xb_
        complexed with mn, tla

More info for Protein automated matches from d.58.29.0: automated matches

Timeline for Protein automated matches from d.58.29.0: automated matches: