SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2016272Fold a.264: Duffy binding domain-like [140923] (1 superfamily)
    consist of two subdomains, each containing a three-helical bundle
  4. 2016273Superfamily a.264.1: Duffy binding domain-like [140924] (2 families) (S)
    automatically mapped to Pfam PF05424
  5. 2016274Family a.264.1.1: Duffy binding domain [140925] (3 protein domains)
    Pfam PF05424
  6. 2016286Protein automated matches [191262] (2 species)
    not a true protein

Species:

  1. 2016287Plasmodium vivax [TaxId:126793] [189825] (4 PDB entries)
    1. Domains for 3rrc:
      1. 2016288Domain d3rrca1: 3rrc A:211-508 [185128]
        Other proteins in same PDB: d3rrca2, d3rrcb2
        automated match to d2c6ja1
        complexed with edo, po4
      2. 2016289Domain d3rrcb1: 3rrc B:211-508 [185129]
        Other proteins in same PDB: d3rrca2, d3rrcb2
        automated match to d2c6ja1
        complexed with edo, po4
    2. Domains for 4nuu:
      1. 2016290Domain d4nuua1: 4nuu A:211-508 [236629]
        Other proteins in same PDB: d4nuua2, d4nuub2
        automated match to d3rrca_
      2. 2016291Domain d4nuub1: 4nuu B:211-508 [236628]
        Other proteins in same PDB: d4nuua2, d4nuub2
        automated match to d3rrca_
    3. Domains for 4nuv:
      1. 2016293Domain d4nuva_: 4nuv A: [236627]
        automated match to d3rrca_
        complexed with gol
      2. 2016294Domain d4nuvb_: 4nuv B: [236626]
        automated match to d3rrca_
        complexed with gol
    4. Domain for 4yfs:
  2. 2287655Plasmodium knowlesi [TaxId:5850] [330956] (1 PDB entry)

More info for Protein automated matches from a.264.1.1: Duffy binding domain

Timeline for Protein automated matches from a.264.1.1: Duffy binding domain: