SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2133075Fold c.68: Nucleotide-diphospho-sugar transferases [53447] (1 superfamily)
    3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest
  4. 2133076Superfamily c.68.1: Nucleotide-diphospho-sugar transferases [53448] (20 families) (S)
  5. 2133255Family c.68.1.6: glucose-1-phosphate thymidylyltransferase [53464] (4 protein domains)
    automatically mapped to Pfam PF00483
  6. 2133386Protein automated matches [191218] (4 species)
    not a true protein

Species:

  1. 2133387Pseudomonas aeruginosa, PA01 [TaxId:208964] [193238] (10 PDB entries)
    1. Domains for 3zlk:
      1. 2133400Domain d3zlka1: 3zlk A:2-293 [218313]
        Other proteins in same PDB: d3zlka2
        automated match to d3zllb_
        complexed with cl, y46
      2. 2133401Domain d3zlkb_: 3zlk B: [218314]
        Other proteins in same PDB: d3zlka2
        automated match to d3zllb_
        complexed with cl, y46
      3. 2133402Domain d3zlkc_: 3zlk C: [218315]
        Other proteins in same PDB: d3zlka2
        automated match to d3zllb_
        complexed with cl, y46
      4. 2133403Domain d3zlkd_: 3zlk D: [218316]
        Other proteins in same PDB: d3zlka2
        automated match to d3zllb_
        complexed with cl, y46
    2. Domains for 3zll:
      1. 2133396Domain d3zlla1: 3zll A:2-293 [201338]
        Other proteins in same PDB: d3zlla2, d3zllb2
        automated match to d3zllb_
        complexed with 4wf, cl, gol, mes
      2. 2133397Domain d3zllb1: 3zll B:1-293 [193239]
        Other proteins in same PDB: d3zlla2, d3zllb2
        automated match to d1fxob_
        complexed with 4wf, cl, gol, mes
      3. 2133398Domain d3zllc_: 3zll C: [201339]
        Other proteins in same PDB: d3zlla2, d3zllb2
        automated match to d3zllb_
        complexed with 4wf, cl, gol, mes
      4. 2133399Domain d3zlld_: 3zll D: [201340]
        Other proteins in same PDB: d3zlla2, d3zllb2
        automated match to d3zllb_
        complexed with 4wf, cl, gol, mes
    3. Domains for 4b2w:
      1. 2133412Domain d4b2wa1: 4b2w A:1-293 [197137]
        Other proteins in same PDB: d4b2wa2
        automated match to d1fxob_
        complexed with bz0, cl, gol, mes
      2. 2133413Domain d4b2wb_: 4b2w B: [197135]
        Other proteins in same PDB: d4b2wa2
        automated match to d1fxob_
        complexed with bz0, cl, gol, mes
      3. 2133414Domain d4b2wc_: 4b2w C: [197134]
        Other proteins in same PDB: d4b2wa2
        automated match to d1fxob_
        complexed with bz0, cl, gol, mes
      4. 2133415Domain d4b2wd_: 4b2w D: [197136]
        Other proteins in same PDB: d4b2wa2
        automated match to d1fxob_
        complexed with bz0, cl, gol, mes
    4. Domains for 4b2x:
      1. 2133388Domain d4b2xa1: 4b2x A:1-293 [219255]
        Other proteins in same PDB: d4b2xa2, d4b2xb2
        automated match to d3zllb_
        complexed with cl, mes, niq
      2. 2133389Domain d4b2xb1: 4b2x B:0-293 [219256]
        Other proteins in same PDB: d4b2xa2, d4b2xb2
        automated match to d3zllb_
        complexed with cl, mes, niq
      3. 2133390Domain d4b2xc_: 4b2x C: [219257]
        Other proteins in same PDB: d4b2xa2, d4b2xb2
        automated match to d3zllb_
        complexed with cl, mes, niq
      4. 2133391Domain d4b2xd_: 4b2x D: [219258]
        Other proteins in same PDB: d4b2xa2, d4b2xb2
        automated match to d3zllb_
        complexed with cl, mes, niq
    5. Domains for 4b3u:
      1. 2133392Domain d4b3ua1: 4b3u A:1-293 [219273]
        Other proteins in same PDB: d4b3ua2, d4b3uc2
        automated match to d3zllb_
        complexed with cl, gol, mes, nwl
      2. 2133393Domain d4b3ub_: 4b3u B: [219274]
        Other proteins in same PDB: d4b3ua2, d4b3uc2
        automated match to d3zllb_
        complexed with cl, gol, mes, nwl
      3. 2133394Domain d4b3uc1: 4b3u C:1-293 [219275]
        Other proteins in same PDB: d4b3ua2, d4b3uc2
        automated match to d3zllb_
        complexed with cl, gol, mes, nwl
      4. 2133395Domain d4b3ud_: 4b3u D: [219276]
        Other proteins in same PDB: d4b3ua2, d4b3uc2
        automated match to d3zllb_
        complexed with cl, gol, mes, nwl
    6. Domains for 4b42:
      1. 2133424Domain d4b42a_: 4b42 A: [219279]
        automated match to d3zllb_
        complexed with 942, cl, mes
      2. 2133425Domain d4b42b_: 4b42 B: [219280]
        automated match to d3zllb_
        complexed with 942, cl, mes
      3. 2133426Domain d4b42c_: 4b42 C: [219281]
        automated match to d3zllb_
        complexed with 942, cl, mes
      4. 2133427Domain d4b42d_: 4b42 D: [219282]
        automated match to d3zllb_
        complexed with 942, cl, mes
    7. Domains for 4b4b:
      1. 2133408Domain d4b4ba1: 4b4b A:1-293 [219284]
        Other proteins in same PDB: d4b4ba2
        automated match to d3zllb_
        complexed with cl, gjb, mes
      2. 2133409Domain d4b4bb_: 4b4b B: [219285]
        Other proteins in same PDB: d4b4ba2
        automated match to d3zllb_
        complexed with cl, gjb, mes
      3. 2133410Domain d4b4bc_: 4b4b C: [219286]
        Other proteins in same PDB: d4b4ba2
        automated match to d3zllb_
        complexed with cl, gjb, mes
      4. 2133411Domain d4b4bd_: 4b4b D: [219287]
        Other proteins in same PDB: d4b4ba2
        automated match to d3zllb_
        complexed with cl, gjb, mes
    8. Domains for 4b4g:
      1. 2133420Domain d4b4ga_: 4b4g A: [219289]
        automated match to d3zllb_
        complexed with cl, kkt, mes
      2. 2133421Domain d4b4gb_: 4b4g B: [219290]
        automated match to d3zllb_
        complexed with cl, kkt, mes
      3. 2133422Domain d4b4gc_: 4b4g C: [219291]
        automated match to d3zllb_
        complexed with cl, kkt, mes
      4. 2133423Domain d4b4gd_: 4b4g D: [219292]
        automated match to d3zllb_
        complexed with cl, kkt, mes
    9. Domains for 4b4m:
      1. 2133416Domain d4b4ma1: 4b4m A:1-293 [219308]
        Other proteins in same PDB: d4b4ma2
        automated match to d3zllb_
        complexed with cl, jwt, mes
      2. 2133417Domain d4b4mb_: 4b4m B: [219309]
        Other proteins in same PDB: d4b4ma2
        automated match to d3zllb_
        complexed with cl, jwt, mes
      3. 2133418Domain d4b4mc_: 4b4m C: [219310]
        Other proteins in same PDB: d4b4ma2
        automated match to d3zllb_
        complexed with cl, jwt, mes
      4. 2133419Domain d4b4md_: 4b4m D: [219311]
        Other proteins in same PDB: d4b4ma2
        automated match to d3zllb_
        complexed with cl, jwt, mes
    10. Domains for 4b5b:
      1. 2133404Domain d4b5ba_: 4b5b A: [219332]
        automated match to d3zllb_
        complexed with bbe, cl
      2. 2133405Domain d4b5bb_: 4b5b B: [219333]
        automated match to d3zllb_
        complexed with bbe, cl
      3. 2133406Domain d4b5bc_: 4b5b C: [219334]
        automated match to d3zllb_
        complexed with bbe, cl
      4. 2133407Domain d4b5bd_: 4b5b D: [219335]
        automated match to d3zllb_
        complexed with bbe, cl
  2. 2133428Salmonella typhimurium [TaxId:90371] [189600] (2 PDB entries)
    1. Domains for 3pkp:
      1. 2133433Domain d3pkpa_: 3pkp A: [183809]
        automated match to d1iima_
        complexed with dtp, mg
      2. 2133434Domain d3pkpb_: 3pkp B: [183810]
        automated match to d1iima_
        complexed with dtp, mg
      3. 2133435Domain d3pkpc_: 3pkp C: [183811]
        automated match to d1iima_
        complexed with dtp, mg
      4. 2133436Domain d3pkpd_: 3pkp D: [183812]
        automated match to d1iima_
        complexed with dtp, mg
      5. 2133437Domain d3pkpi_: 3pkp I: [183813]
        automated match to d1iima_
        complexed with dtp, mg
      6. 2133438Domain d3pkpj_: 3pkp J: [183814]
        automated match to d1iima_
        complexed with dtp, mg
      7. 2133439Domain d3pkpk_: 3pkp K: [183815]
        automated match to d1iima_
        complexed with dtp, mg
      8. 2133440Domain d3pkpl_: 3pkp L: [183816]
        automated match to d1iima_
        complexed with dtp, mg
    2. Domains for 3pkq:
      1. 2133429Domain d3pkqa_: 3pkq A: [183817]
        automated match to d1iima_
        complexed with dgt, mg, peg
      2. 2133430Domain d3pkqb_: 3pkq B: [183818]
        automated match to d1iima_
        complexed with dgt, mg, peg
      3. 2133431Domain d3pkqc_: 3pkq C: [183819]
        automated match to d1iima_
        complexed with dgt, mg, peg
      4. 2133432Domain d3pkqd_: 3pkq D: [183820]
        automated match to d1iima_
        complexed with dgt, mg, peg
  3. 2271651Burkholderia vietnamiensis [TaxId:269482] [314952] (3 PDB entries)
    1. Domains for 5ids:
      1. 2271652Domain d5idsd_: 5ids D: [314953]
        automated match to d1fxob_
      2. 2271675Domain d5idsc_: 5ids C: [314976]
        automated match to d1fxob_
      3. 2272012Domain d5idsa_: 5ids A: [315313]
        automated match to d1fxob_
      4. 2272141Domain d5idsb_: 5ids B: [315442]
        automated match to d1fxob_
    2. Domains for 5idt:
      1. 2271653Domain d5idtb_: 5idt B: [314954]
        automated match to d1fxob_
        complexed with edo, thm
      2. 2271734Domain d5idtd_: 5idt D: [315035]
        automated match to d1fxob_
        complexed with edo, thm
      3. 2271796Domain d5idtc_: 5idt C: [315097]
        automated match to d1fxob_
        complexed with edo, thm
      4. 2271840Domain d5idta_: 5idt A: [315141]
        automated match to d1fxob_
        complexed with edo, thm
    3. Domains for 5ify:
      1. 2271797Domain d5ifya_: 5ify A: [315098]
        automated match to d1fxob_
        complexed with trh, ump
      2. 2271812Domain d5ifyf_: 5ify F: [315113]
        automated match to d1fxob_
        complexed with trh, ump
      3. 2271814Domain d5ifyb_: 5ify B: [315115]
        automated match to d1fxob_
        complexed with trh, ump
      4. 2271820Domain d5ifye_: 5ify E: [315121]
        automated match to d1fxob_
        complexed with trh, ump
      5. 2271949Domain d5ifyc_: 5ify C: [315250]
        automated match to d1fxob_
        complexed with trh, ump
      6. 2271975Domain d5ifyd_: 5ify D: [315276]
        automated match to d1fxob_
        complexed with trh, ump
  4. 2286669Pseudomonas aeruginosa [TaxId:287] [329970] (6 PDB entries)
    1. Domains for 5fts:
      1. 2286676Domain d5ftsb_: 5fts B: [329977]
        automated match to d1fxob_
        complexed with cl, mes, p3i
      2. 2286680Domain d5ftsd_: 5fts D: [329981]
        automated match to d1fxob_
        complexed with cl, mes, p3i
    2. Domains for 5ftv:
      1. 2286670Domain d5ftvb_: 5ftv B: [329971]
        automated match to d1fxob_
        complexed with cl, kdt, mes
      2. 2286681Domain d5ftvd_: 5ftv D: [329982]
        automated match to d1fxob_
        complexed with cl, kdt, mes
    3. Domains for 5fu0:
      1. 2286678Domain d5fu0b_: 5fu0 B: [329979]
        automated match to d1fxob_
        complexed with cl, fkh, mes
      2. 2286679Domain d5fu0d_: 5fu0 D: [329980]
        automated match to d1fxob_
        complexed with cl, fkh, mes
    4. Domains for 5fu8:
      1. 2286694Domain d5fu8d_: 5fu8 D: [329995]
        automated match to d1fxob_
        complexed with cl, dh5, mes
      2. 2286699Domain d5fu8b_: 5fu8 B: [330000]
        automated match to d1fxob_
        complexed with cl, dh5, mes
    5. Domains for 5fuh:
      1. 2286677Domain d5fuhd_: 5fuh D: [329978]
        automated match to d1fxob_
        complexed with cl, gol, hkx, mes
      2. 2286697Domain d5fuhb_: 5fuh B: [329998]
        automated match to d1fxob_
        complexed with cl, gol, hkx, mes
    6. Domains for 5fye:
      1. 2288315Domain d5fyed_: 5fye D: [331616]
        automated match to d1fxob_
        complexed with cl, ld6, mes
      2. 2288386Domain d5fyeb_: 5fye B: [331687]
        automated match to d1fxob_
        complexed with cl, ld6, mes

More info for Protein automated matches from c.68.1.6: glucose-1-phosphate thymidylyltransferase

Timeline for Protein automated matches from c.68.1.6: glucose-1-phosphate thymidylyltransferase: