SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1997864Fold a.47: STAT-like [47654] (6 superfamilies)
    4 long helices; bundle, left-handed twist (coiled coil); right-handed superhelix
  4. 1997877Superfamily a.47.2: t-snare proteins [47661] (1 family) (S)
  5. 1997878Family a.47.2.1: t-snare proteins [47662] (6 protein domains)
  6. 1997902Protein automated matches [191190] (4 species)
    not a true protein

Species:

  1. 1997903Artificial gene [TaxId:32630] [189472] (1 PDB entry)
  2. 1997907Human (Homo sapiens) [TaxId:9606] [226308] (1 PDB entry)
  3. 1997909Rattus norvegicus [311131] (1 PDB entry)
  4. 2286207Saccharomyces cerevisiae [TaxId:559292] [329508] (2 PDB entries)
    1. Domain for 5lg4:
    2. Domains for 5m4y:
      1. 2286208Domain d5m4ye1: 5m4y E:36-227 [329509]
        Other proteins in same PDB: d5m4ya2, d5m4yc2, d5m4ye2
        automated match to d1fioa_
        complexed with gol
      2. 2286253Domain d5m4yc1: 5m4y C:36-223 [329554]
        Other proteins in same PDB: d5m4ya2, d5m4yc2, d5m4ye2
        automated match to d1fioa_
        complexed with gol
      3. 2286289Domain d5m4ya1: 5m4y A:36-225 [329590]
        Other proteins in same PDB: d5m4ya2, d5m4yc2, d5m4ye2
        automated match to d1fioa_
        complexed with gol

More info for Protein automated matches from a.47.2.1: t-snare proteins

Timeline for Protein automated matches from a.47.2.1: t-snare proteins: