Class b: All beta proteins [48724] (176 folds) |
Fold b.85: beta-clip [51268] (7 superfamilies) double-stranded ribbon sharply bent in two places; the ribbon ends form incomplete barrel; jelly-roll |
Superfamily b.85.4: dUTPase-like [51283] (2 families) forms tight trimer through an additional beta-sheet in each subunit subunit beta-sheets are orthogonally packed around the three-fold axis |
Family b.85.4.0: automated matches [191644] (1 protein) not a true family |
Protein automated matches [191182] (12 species) not a true protein |
Bacillus halodurans [TaxId:272558] [270836] (1 PDB entry) |
Domain d4xjca_: 4xjc A: [270837] automated match to d2qxxa_ complexed with mg, peg, ttp |
Domain d4xjcb_: 4xjc B: [270838] automated match to d2qxxa_ complexed with mg, peg, ttp |
Domain d4xjcc_: 4xjc C: [270839] automated match to d2qxxa_ complexed with mg, peg, ttp |
Domain d4xjcd_: 4xjc D: [270842] automated match to d2qxxa_ complexed with mg, peg, ttp |
Domain d4xjce_: 4xjc E: [270841] automated match to d2qxxa_ complexed with mg, peg, ttp |
Domain d4xjcf_: 4xjc F: [270840] automated match to d2qxxa_ complexed with mg, peg, ttp |
Bacillus subtilis [TaxId:1423] [189439] (11 PDB entries) |
Domain d2baza_: 2baz A: [197782] automated match to d2bazc_ |
Domain d2bazb_: 2baz B: [197783] automated match to d2bazc_ |
Domain d2bazc_: 2baz C: [193858] automated match to d2xcea_ |
Domain d2xcda_: 2xcd A: [170020] automated match to d1sixa_ complexed with cl, gol, mg, na |
Domain d2xcdb_: 2xcd B: [170021] automated match to d1sixa_ complexed with cl, gol, mg, na |
Domain d2xcdc_: 2xcd C: [170022] automated match to d1sixa_ complexed with cl, gol, mg, na |
Domain d2xcdd_: 2xcd D: [170023] automated match to d1sixa_ complexed with cl, gol, mg, na |
Domain d2xcde_: 2xcd E: [170024] automated match to d1sixa_ complexed with cl, gol, mg, na |
Domain d2xcdf_: 2xcd F: [170025] automated match to d1sixa_ complexed with cl, gol, mg, na |
Domain d2xcea_: 2xce A: [170026] automated match to d1sixa_ complexed with ca, dup, gol |
Domain d2xceb_: 2xce B: [170027] automated match to d1sixa_ complexed with ca, dup, gol |
Domain d2xcec_: 2xce C: [170028] automated match to d1sixa_ complexed with ca, dup, gol |
Domain d2xced_: 2xce D: [170029] automated match to d1sixa_ complexed with ca, dup, gol |
Domain d2xcee_: 2xce E: [170030] automated match to d1sixa_ complexed with ca, dup, gol |
Domain d2xcef_: 2xce F: [170031] automated match to d1sixa_ complexed with ca, dup, gol |
Domain d2xx6a_: 2xx6 A: [207389] automated match to d2bazc_ |
Domain d2xx6b_: 2xx6 B: [207390] automated match to d2bazc_ |
Domain d2xx6c_: 2xx6 C: [207391] automated match to d2bazc_ |
Domain d2xx6d_: 2xx6 D: [207392] automated match to d2bazc_ |
Domain d2xy3a_: 2xy3 A: [207432] automated match to d2bazc_ complexed with dup, mg |
Domain d2xy3b_: 2xy3 B: [207433] automated match to d2bazc_ complexed with dup, mg |
Domain d2xy3c_: 2xy3 C: [207434] automated match to d2bazc_ complexed with dup, mg |
Domain d2xy3d_: 2xy3 D: [207435] automated match to d2bazc_ complexed with dup, mg |
Domain d2xy3e_: 2xy3 E: [207436] automated match to d2bazc_ complexed with dup, mg |
Domain d2xy3f_: 2xy3 F: [207437] automated match to d2bazc_ complexed with dup, mg |
Domain d2y1ta_: 2y1t A: [207451] automated match to d2bazc_ complexed with dud |
Domain d2y1tb_: 2y1t B: [207452] automated match to d2bazc_ complexed with dud |
Domain d2y1tc_: 2y1t C: [207453] automated match to d2bazc_ complexed with dud |
Domain d2y1td_: 2y1t D: [207454] automated match to d2bazc_ complexed with dud |
Domain d2y1te_: 2y1t E: [207455] automated match to d2bazc_ complexed with dud |
Domain d2y1tf_: 2y1t F: [207456] automated match to d2bazc_ complexed with dud |
Domain d4ao5a_: 4ao5 A: [201464] automated match to d4ao5c_ complexed with na, ump |
Domain d4ao5b_: 4ao5 B: [201465] automated match to d4ao5e_ complexed with na, ump |
Domain d4ao5c_: 4ao5 C: [196733] automated match to d2xcea_ complexed with na, ump |
Domain d4ao5d_: 4ao5 D: [196735] automated match to d2xcea_ complexed with na, ump |
Domain d4ao5e_: 4ao5 E: [196734] automated match to d2xcea_ complexed with na, ump |
Domain d4ao5f_: 4ao5 F: [201466] automated match to d4ao5c_ complexed with na, ump |
Domain d4aooa_: 4aoo A: [219082] automated match to d4apza_ complexed with dur, mg, po4, pop |
Domain d4aoob_: 4aoo B: [219083] automated match to d4apz1_ complexed with dur, mg, po4, pop |
Domain d4aooc_: 4aoo C: [219084] automated match to d4apz1_ complexed with dur, mg, po4, pop |
Domain d4aood_: 4aoo D: [219085] automated match to d4apz1_ complexed with dur, mg, po4, pop |
Domain d4aoza_: 4aoz A: [219086] automated match to d4apza_ complexed with act, cl, dur, mg, pop |
Domain d4aozb_: 4aoz B: [219087] automated match to d4apza_ complexed with act, cl, dur, mg, pop |
Domain d4aozc_: 4aoz C: [219088] automated match to d4apza_ complexed with act, cl, dur, mg, pop |
Domain d4apz1_: 4apz 1: [193005] automated match to d2xcea_ complexed with dur, mg, po4, pop |
Domain d4apz2_: 4apz 2: [193012] automated match to d2xcea_ complexed with dur, mg, po4, pop |
Domain d4apz3_: 4apz 3: [193013] automated match to d2xcea_ complexed with dur, mg, po4, pop |
Domain d4apz4_: 4apz 4: [193008] automated match to d2xcea_ complexed with dur, mg, po4, pop |
Domain d4apz5_: 4apz 5: [193006] automated match to d2xcea_ complexed with dur, mg, po4, pop |
Domain d4apz6_: 4apz 6: [193015] automated match to d2xcea_ complexed with dur, mg, po4, pop |
Domain d4apz7_: 4apz 7: [193009] automated match to d2xcea_ complexed with dur, mg, po4, pop |
Domain d4apz8_: 4apz 8: [193007] automated match to d2xcea_ complexed with dur, mg, po4, pop |
Domain d4apz9_: 4apz 9: [193010] automated match to d2xcea_ complexed with dur, mg, po4, pop |
Domain d4apza_: 4apz A: [193016] automated match to d2xcea_ complexed with dur, mg, po4, pop |
Domain d4apzb_: 4apz B: [193014] automated match to d2xcea_ complexed with dur, mg, po4, pop |
Domain d4apzc_: 4apz C: [193017] automated match to d2xcea_ complexed with dur, mg, po4, pop |
Domain d4apzd_: 4apz D: [201472] automated match to d4apz1_ complexed with dur, mg, po4, pop |
Domain d4apze_: 4apz E: [201473] automated match to d4apz1_ complexed with dur, mg, po4, pop |
Domain d4apzf_: 4apz F: [201474] automated match to d4apza_ complexed with dur, mg, po4, pop |
Domain d4apzg_: 4apz G: [201475] automated match to d4apz1_ complexed with dur, mg, po4, pop |
Domain d4apzh_: 4apz H: [201476] automated match to d4apz1_ complexed with dur, mg, po4, pop |
Domain d4apzi_: 4apz I: [201477] automated match to d4apz1_ complexed with dur, mg, po4, pop |
Domain d4apzj_: 4apz J: [201478] automated match to d4apz1_ complexed with dur, mg, po4, pop |
Domain d4apzk_: 4apz K: [201479] automated match to d4apz1_ complexed with dur, mg, po4, pop |
Domain d4apzl_: 4apz L: [201480] automated match to d4apz1_ complexed with dur, mg, po4, pop |
Domain d4apzm_: 4apz M: [201481] automated match to d4apz1_ complexed with dur, mg, po4, pop |
Domain d4apzn_: 4apz N: [201482] automated match to d4apz1_ complexed with dur, mg, po4, pop |
Domain d4apzo_: 4apz O: [201483] automated match to d4apz1_ complexed with dur, mg, po4, pop |
Domain d4apzp_: 4apz P: [201484] automated match to d4apz1_ complexed with dur, mg, po4, pop |
Domain d4apzq_: 4apz Q: [201485] automated match to d4apza_ complexed with dur, mg, po4, pop |
Domain d4apzr_: 4apz R: [201486] automated match to d4apz1_ complexed with dur, mg, po4, pop |
Domain d4apzs_: 4apz S: [201487] automated match to d4apz1_ complexed with dur, mg, po4, pop |
Domain d4apzt_: 4apz T: [201488] automated match to d4apz1_ complexed with dur, mg, po4, pop |
Domain d4apzu_: 4apz U: [201489] automated match to d4apz1_ complexed with dur, mg, po4, pop |
Domain d4apzv_: 4apz V: [201490] automated match to d4apz1_ complexed with dur, mg, po4, pop |
Domain d4apzw_: 4apz W: [201491] automated match to d4apz1_ complexed with dur, mg, po4, pop |
Domain d4apzx_: 4apz X: [201492] automated match to d4apz1_ complexed with dur, mg, po4, pop |
Domain d4apzy_: 4apz Y: [201493] automated match to d4apz1_ complexed with dur, mg, po4, pop |
Domain d4apzz_: 4apz Z: [201494] automated match to d4apz1_ complexed with dur, mg, po4, pop |
Domain d4b0ha_: 4b0h A: [219244] automated match to d4apza_ complexed with cl, dur, mg, pg4, pop |
Domain d4b0hb_: 4b0h B: [219245] automated match to d4apza_ complexed with cl, dur, mg, pg4, pop |
Domain d4b0hc_: 4b0h C: [219246] automated match to d4apza_ complexed with cl, dur, mg, pg4, pop |
Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [189530] (3 PDB entries) |
Domain d3f4fa_: 3f4f A: [209790] automated match to d1sixa_ complexed with edo, na, peg, ump |
Domain d3f4fb_: 3f4f B: [209791] automated match to d1sixa_ complexed with edo, na, peg, ump |
Domain d3f4fc_: 3f4f C: [209792] automated match to d1sixa_ complexed with edo, na, peg, ump |
Domain d3hhqa_: 3hhq A: [211040] automated match to d1sixa_ complexed with cl, edo, gol, na, peg, so4 |
Domain d3hhqb_: 3hhq B: [211041] automated match to d1sixa_ complexed with cl, edo, gol, na, peg, so4 |
Domain d3hhqc_: 3hhq C: [211042] automated match to d1sixa_ complexed with cl, edo, gol, na, peg, so4 |
Domain d3hhqd_: 3hhq D: [211043] automated match to d1sixa_ complexed with cl, edo, gol, na, peg, so4 |
Domain d3hhqe_: 3hhq E: [211044] automated match to d1sixa_ complexed with cl, edo, gol, na, peg, so4 |
Domain d3hhqf_: 3hhq F: [211045] automated match to d1sixa_ complexed with cl, edo, gol, na, peg, so4 |
Domain d3hhqg_: 3hhq G: [211046] automated match to d1sixa_ complexed with cl, edo, gol, na, peg, so4 |
Domain d3hhqh_: 3hhq H: [211047] automated match to d1sixa_ complexed with cl, edo, gol, na, peg, so4 |
Domain d3hhqi_: 3hhq I: [211048] automated match to d1sixa_ complexed with cl, edo, gol, na, peg, so4 |
Domain d3hhqj_: 3hhq J: [211049] automated match to d1sixa_ complexed with cl, edo, gol, na, peg, so4 |
Domain d3hhqk_: 3hhq K: [211050] automated match to d1sixa_ complexed with cl, edo, gol, na, peg, so4 |
Domain d3hhql_: 3hhq L: [211051] automated match to d1sixa_ complexed with cl, edo, gol, na, peg, so4 |
Domain d3hhqm_: 3hhq M: [211052] automated match to d1sixa_ complexed with cl, edo, gol, na, peg, so4 |
Domain d3hhqn_: 3hhq N: [211053] automated match to d1sixa_ complexed with cl, edo, gol, na, peg, so4 |
Domain d3hhqo_: 3hhq O: [211054] automated match to d1sixa_ complexed with cl, edo, gol, na, peg, so4 |
Domain d3hhqp_: 3hhq P: [211055] automated match to d1sixa_ complexed with cl, edo, gol, na, peg, so4 |
Domain d3hhqq_: 3hhq Q: [211056] automated match to d1sixa_ complexed with cl, edo, gol, na, peg, so4 |
Domain d3hhqr_: 3hhq R: [211057] automated match to d1sixa_ complexed with cl, edo, gol, na, peg, so4 |
Domain d3hhqs_: 3hhq S: [211058] automated match to d1sixa_ complexed with cl, edo, gol, na, peg, so4 |
Domain d3hhqt_: 3hhq T: [211059] automated match to d1sixa_ complexed with cl, edo, gol, na, peg, so4 |
Domain d3hhqu_: 3hhq U: [211060] automated match to d1sixa_ complexed with cl, edo, gol, na, peg, so4 |
Domain d3hhqv_: 3hhq V: [211061] automated match to d1sixa_ complexed with cl, edo, gol, na, peg, so4 |
Domain d3hhqw_: 3hhq W: [211062] automated match to d1sixa_ complexed with cl, edo, gol, na, peg, so4 |
Domain d3hhqx_: 3hhq X: [211063] automated match to d1sixa_ complexed with cl, edo, gol, na, peg, so4 |
Domain d3p48a_: 3p48 A: [183494] automated match to d1q5hb_ complexed with dup, mg |
Domain d3p48b_: 3p48 B: [183495] automated match to d1q5hb_ complexed with dup, mg |
Domain d3p48c_: 3p48 C: [183496] automated match to d1q5hb_ complexed with dup, mg |
Brucella melitensis [TaxId:359391] [255959] (2 PDB entries) |
Domain d3mbqa_: 3mbq A: [247633] automated match to d1sixa_ complexed with edo, gol, so4 |
Domain d3mbqb_: 3mbq B: [247634] automated match to d1sixa_ complexed with edo, gol, so4 |
Domain d3mbqc_: 3mbq C: [247635] automated match to d1sixa_ complexed with edo, gol, so4 |
Domain d3mdxa_: 3mdx A: [247660] automated match to d1sixa_ complexed with edo |
Entamoeba histolytica [TaxId:294381] [225850] (1 PDB entry) |
Domain d3lqwa_: 3lqw A: [212990] automated match to d1sjnb_ complexed with edo, gol |
Fruit fly (Drosophila melanogaster) [TaxId:7227] [225535] (1 PDB entry) |
Domain d3ecya_: 3ecy A: [209458] automated match to d1sixa_ |
Domain d3ecyb_: 3ecy B: [209459] automated match to d1sixa_ |
Human (Homo sapiens) [TaxId:9606] [226031] (4 PDB entries) |
Domain d2hqua_: 2hqu A: [147361] automated match to d4apza_ complexed with cl, dup, mg |
Domain d2hqub_: 2hqu B: [147362] automated match to d4apza_ complexed with cl, dup, mg |
Domain d2hquc_: 2hqu C: [147363] automated match to d4apza_ complexed with cl, dup, mg |
Domain d3araa_: 3ara A: [208345] automated match to d4apza_ complexed with mg, mkh |
Domain d3arab_: 3ara B: [208346] automated match to d4apza_ complexed with mg, mkh |
Domain d3arac_: 3ara C: [208347] automated match to d4apza_ complexed with mg, mkh |
Domain d3arna_: 3arn A: [208351] automated match to d4apza_ complexed with mg, msj |
Domain d3arnb_: 3arn B: [208352] automated match to d4apza_ complexed with mg, msj |
Domain d3arnc_: 3arn C: [208353] automated match to d4apza_ complexed with mg, msj |
Domain d3ehwa_: 3ehw A: [158154] automated match to d4apza_ complexed with dup, mg |
Domain d3ehwb_: 3ehw B: [158155] automated match to d4apza_ complexed with dup, mg |
Domain d3ehwc_: 3ehw C: [158156] automated match to d4apza_ complexed with dup, mg |
Domain d3ehwx_: 3ehw X: [158157] automated match to d4apza_ complexed with dup, mg |
Domain d3ehwy_: 3ehw Y: [158158] automated match to d4apza_ complexed with dup, mg |
Domain d3ehwz_: 3ehw Z: [158159] automated match to d4apza_ complexed with dup, mg |
Mason-pfizer monkey virus [TaxId:11855] [225168] (16 PDB entries) |
Domain d2d4la_: 2d4l A: [203907] automated match to d1q5hc_ |
Domain d2d4ma_: 2d4m A: [203908] automated match to d1q5hc_ |
Domain d2d4na_: 2d4n A: [203909] automated match to d1q5hc_ complexed with dup, mg, trs |
Domain d3tp1a_: 3tp1 A: [216946] automated match to d1q5hc_ complexed with dup, mg |
Domain d3tpna_: 3tpn A: [216967] automated match to d1q5hc_ complexed with dtt, dup, mg, trs |
Domain d3tpsa_: 3tps A: [216968] automated match to d1q5hc_ complexed with dup, mg, trs |
Domain d3tpwa_: 3tpw A: [216969] automated match to d1q5hc_ complexed with dup, mg, trs |
Domain d3tpya_: 3tpy A: [216970] automated match to d1q5hc_ complexed with dup, mg, trs, ump |
Domain d3tq3a_: 3tq3 A: [216971] automated match to d1q5hc_ complexed with dup, mg, ump |
Domain d3tq4a_: 3tq4 A: [216972] automated match to d1q5hc_ complexed with dup, mg, trs, ump |
Domain d3tq5a_: 3tq5 A: [216973] automated match to d1q5hc_ complexed with trs, ump |
Domain d3trla_: 3trl A: [217021] automated match to d1q5hc_ complexed with ump |
Domain d3trna_: 3trn A: [217022] automated match to d1q5hc_ complexed with ump |
Domain d3ts6a_: 3ts6 A: [217023] automated match to d1q5hc_ complexed with ump |
Domain d3tsla_: 3tsl A: [217026] automated match to d1q5hc_ complexed with ump |
Domain d3ttaa_: 3tta A: [217027] automated match to d1q5hc_ complexed with ump |
Paramecium bursaria chlorella virus il3a [TaxId:46019] [255769] (3 PDB entries) |
Domain d3c2ta_: 3c2t A: [245446] automated match to d3ehwa_ complexed with dud, mg |
Domain d3c2tb_: 3c2t B: [245447] automated match to d3ehwa_ complexed with dud, mg |
Domain d3c3ia_: 3c3i A: [245454] automated match to d3ehwa_ complexed with dud, mg |
Domain d3c3ib_: 3c3i B: [245455] automated match to d3ehwa_ complexed with dud, mg |
Domain d3c3ic_: 3c3i C: [245456] automated match to d3ehwa_ complexed with dud, mg |
Domain d3c3id_: 3c3i D: [245457] automated match to d3ehwa_ complexed with dud, mg |
Domain d3ca9a_: 3ca9 A: [245475] automated match to d1sixa_ complexed with dud, mg |
Domain d3ca9b_: 3ca9 B: [245476] automated match to d1sixa_ complexed with dud, mg |
Staphylococcus phage [TaxId:12360] [227850] (2 PDB entries) |
Domain d4gv8a_: 4gv8 A: [230238] automated match to d4gv8e_ complexed with dup, mg |
Domain d4gv8b_: 4gv8 B: [230241] automated match to d4gv8e_ complexed with dup, mg |
Domain d4gv8c_: 4gv8 C: [230240] automated match to d4gv8e_ complexed with dup, mg |
Domain d4gv8d_: 4gv8 D: [230237] automated match to d4gv8e_ complexed with dup, mg |
Domain d4gv8e_: 4gv8 E: [227851] automated match to d2hqua_ complexed with dup, mg |
Domain d4gv8f_: 4gv8 F: [230239] automated match to d4gv8e_ complexed with dup, mg |
Domain d4wrka_: 4wrk A: [280083] automated match to d4gv8c_ complexed with dup, mg; mutant |
Domain d4wrkb_: 4wrk B: [280081] automated match to d4gv8c_ complexed with dup, mg; mutant |
Domain d4wrkc_: 4wrk C: [280082] automated match to d4gv8c_ complexed with dup, mg; mutant |
Domain d4wrkd_: 4wrk D: [280080] automated match to d4gv8c_ complexed with dup, mg; mutant |
Domain d4wrke_: 4wrk E: [280084] automated match to d4gv8c_ complexed with dup, mg; mutant |
Domain d4wrkf_: 4wrk F: [280085] automated match to d4gv8c_ complexed with dup, mg; mutant |
Staphylococcus phage [TaxId:53369] [256154] (7 PDB entries) |
Domain d3zeza_: 3zez A: [250766] automated match to d4gv8c_ complexed with dup, mg, ni, po4 |
Domain d3zf0a_: 3zf0 A: [250767] automated match to d4gv8c_ complexed with dup, ni; mutant |
Domain d3zf1a_: 3zf1 A: [250768] automated match to d4gv8c_ complexed with dup, ni; mutant |
Domain d3zf2a_: 3zf2 A: [250769] automated match to d4gv8c_ complexed with ni, trs |
Domain d3zf3a_: 3zf3 A: [250770] automated match to d4gv8c_ complexed with ni; mutant |
Domain d3zf4a_: 3zf4 A: [250771] automated match to d4gv8c_ complexed with dup, mg, ni; mutant |
Domain d3zf6a_: 3zf6 A: [250772] automated match to d4gv8c_ complexed with ni, ump; mutant |
Thale cress (Arabidopsis thaliana) [TaxId:3702] [255543] (3 PDB entries) |
Domain d2p9oa_: 2p9o A: [243456] automated match to d3so2a_ complexed with mg |
Domain d2p9ob_: 2p9o B: [243457] automated match to d3so2a_ complexed with mg |
Domain d2p9oc_: 2p9o C: [243458] automated match to d3so2a_ complexed with mg |
Domain d2pc5a_: 2pc5 A: [243469] automated match to d3so2a_ complexed with mg |
Domain d2pc5b_: 2pc5 B: [243470] automated match to d3so2a_ complexed with mg |
Domain d2pc5c_: 2pc5 C: [243471] automated match to d3so2a_ complexed with mg |
Domain d4oopb_: 4oop B: [271181] automated match to d3zeza_ complexed with dup, mg |
Timeline for Protein automated matches from b.85.4.0: automated matches: