Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2217451Class e: Multi-domain proteins (alpha and beta) [56572] (69 folds)
  3. 2222059Fold e.18: HydB/Nqo4-like [56761] (1 superfamily)
    3 domains: (1) all-alpha; (2&3) alpha+beta
  4. 2222060Superfamily e.18.1: HydB/Nqo4-like [56762] (3 families) (S)
  5. 2222201Family e.18.1.0: automated matches [191637] (1 protein)
    not a true family
  6. 2222202Protein automated matches [191173] (9 species)
    not a true protein

Species:

  1. 2222203Allochromatium vinosum [TaxId:1049] [189416] (1 PDB entry)
  2. 2222208Escherichia coli [TaxId:1403831] [279526] (3 PDB entries)
    1. Domains for 5a4f:
      1. 2222211Domain d5a4fl_: 5a4f L: [279534]
        Other proteins in same PDB: d5a4fs_, d5a4ft_
        automated match to d3uqyl_
        complexed with cl, f3s, fco, mg, ni, sf3, sf4, so4
      2. 2222212Domain d5a4fm_: 5a4f M: [279539]
        Other proteins in same PDB: d5a4fs_, d5a4ft_
        automated match to d3uqyl_
        complexed with cl, f3s, fco, mg, ni, sf3, sf4, so4
    2. Domains for 5a4i:
      1. 2222209Domain d5a4il_: 5a4i L: [279536]
        Other proteins in same PDB: d5a4is_, d5a4it_
        automated match to d3uqyl_
        complexed with cl, f3s, fco, lmt, mg, ni, sf3, sf4, so4
      2. 2222210Domain d5a4im_: 5a4i M: [279540]
        Other proteins in same PDB: d5a4is_, d5a4it_
        automated match to d3uqyl_
        complexed with cl, f3s, fco, lmt, mg, ni, sf3, sf4, so4
    3. Domains for 5a4m:
      1. 2222213Domain d5a4ml_: 5a4m L: [279533]
        Other proteins in same PDB: d5a4ms_, d5a4mt_
        automated match to d3uqyl_
        complexed with cl, f3s, mg, nfv, sf3, sf4
      2. 2222214Domain d5a4mm_: 5a4m M: [279537]
        Other proteins in same PDB: d5a4ms_, d5a4mt_
        automated match to d3uqyl_
        complexed with cl, f3s, mg, nfv, sf3, sf4
  3. 2222215Escherichia coli [TaxId:562] [195685] (5 PDB entries)
    1. Domains for 3uqy:
      1. 2222218Domain d3uqyl_: 3uqy L: [217495]
        Other proteins in same PDB: d3uqys_, d3uqyt_
        automated match to d3uscl_
        complexed with cl, f3s, f4s, fco, gol, lmt, mg, ni, sf4, so4
      2. 2222219Domain d3uqym_: 3uqy M: [217496]
        Other proteins in same PDB: d3uqys_, d3uqyt_
        automated match to d3uscl_
        complexed with cl, f3s, f4s, fco, gol, lmt, mg, ni, sf4, so4
    2. Domains for 3usc:
      1. 2222224Domain d3uscl_: 3usc L: [195687]
        Other proteins in same PDB: d3uscs_, d3usct_
        automated match to d3myrd_
        complexed with 3ni, cl, f3s, fco, li, lmt, mg, sf3, sf4, so4
      2. 2222225Domain d3uscm_: 3usc M: [195686]
        Other proteins in same PDB: d3uscs_, d3usct_
        automated match to d3myrd_
        complexed with 3ni, cl, f3s, fco, li, lmt, mg, sf3, sf4, so4
    3. Domains for 3use:
      1. 2222220Domain d3usel_: 3use L: [201106]
        Other proteins in same PDB: d3uses_, d3uset_
        automated match to d3uscl_
        complexed with 3ni, cl, f3s, f4s, fco, gol, li, lmt, mg, sf3, sf4, so4
      2. 2222221Domain d3usem_: 3use M: [195688]
        Other proteins in same PDB: d3uses_, d3uset_
        automated match to d3myrd_
        complexed with 3ni, cl, f3s, f4s, fco, gol, li, lmt, mg, sf3, sf4, so4
    4. Domains for 4ue3:
      1. 2222222Domain d4ue3l_: 4ue3 L: [268935]
        Other proteins in same PDB: d4ue3s_, d4ue3t_
        automated match to d3uqyl_
        complexed with cl, f3s, mg, nfv, sf3, sf4, so4
      2. 2222223Domain d4ue3m_: 4ue3 M: [268936]
        Other proteins in same PDB: d4ue3s_, d4ue3t_
        automated match to d3uqyl_
        complexed with cl, f3s, mg, nfv, sf3, sf4, so4
    5. Domains for 5adu:
      1. 2222216Domain d5adul_: 5adu L: [279541]
        Other proteins in same PDB: d5adus_, d5adut_
        automated match to d3uqyl_
        complexed with cl, f3s, fco, lmt, mg, ni, sf3, sf4, so4
      2. 2222217Domain d5adum_: 5adu M: [279542]
        Other proteins in same PDB: d5adus_, d5adut_
        automated match to d3uqyl_
        complexed with cl, f3s, fco, lmt, mg, ni, sf3, sf4, so4
  4. 2222226Hydrogenovibrio marinus [TaxId:28885] [196125] (4 PDB entries)
    1. Domains for 3ayx:
      1. 2222227Domain d3ayxa_: 3ayx A: [198975]
        Other proteins in same PDB: d3ayxb_, d3ayxd_
        automated match to d3ayyc_
        complexed with cmo, cyn, f3s, f4s, fe2, gol, mg, ni, o, sf4
      2. 2222228Domain d3ayxc_: 3ayx C: [198976]
        Other proteins in same PDB: d3ayxb_, d3ayxd_
        automated match to d3ayyc_
        complexed with cmo, cyn, f3s, f4s, fe2, gol, mg, ni, o, sf4
    2. Domains for 3ayy:
      1. 2222231Domain d3ayya_: 3ayy A: [196127]
        Other proteins in same PDB: d3ayyb_, d3ayyd_
        automated match to d3myrd_
        complexed with 3ni, cmo, cyn, f3s, fe2, gol, mg, o, sf3, sf4
      2. 2222232Domain d3ayyc_: 3ayy C: [196126]
        Other proteins in same PDB: d3ayyb_, d3ayyd_
        automated match to d3myrd_
        complexed with 3ni, cmo, cyn, f3s, fe2, gol, mg, o, sf3, sf4
    3. Domains for 3ayz:
      1. 2222229Domain d3ayza_: 3ayz A: [198977]
        Other proteins in same PDB: d3ayzb_, d3ayzd_
        automated match to d3ayyc_
        complexed with 3ni, cmo, cyn, f3s, f4s, fe2, gol, mg, o, sf3, sf4
      2. 2222230Domain d3ayzc_: 3ayz C: [198978]
        Other proteins in same PDB: d3ayzb_, d3ayzd_
        automated match to d3ayyc_
        complexed with 3ni, cmo, cyn, f3s, f4s, fe2, gol, mg, o, sf3, sf4
    4. Domains for 5y34:
      1. 2294792Domain d5y34c_: 5y34 C: [338093]
        Other proteins in same PDB: d5y34b_, d5y34d_
        automated match to d3ayxa_
        complexed with 3ni, f3s, fco, gol, mg, o, sf3, sf4
      2. 2294799Domain d5y34a_: 5y34 A: [338100]
        Other proteins in same PDB: d5y34b_, d5y34d_
        automated match to d3ayxa_
        complexed with 3ni, f3s, fco, gol, mg, o, sf3, sf4
  5. 2222233Ralstonia eutropha [TaxId:381666] [196117] (5 PDB entries)
    1. Domain for 3rgw:
    2. Domain for 4iub:
    3. Domain for 4iuc:
    4. Domain for 4iud:
    5. Domain for 4ttt:
  6. 2269160Cupriavidus necator [TaxId:381666] [312466] (1 PDB entry)
  7. 2270075Cupriavidus necator [TaxId:106590] [313380] (1 PDB entry)
  8. 2287365Escherichia coli [TaxId:83333] [330666] (3 PDB entries)
    1. Domains for 5jrd:
      1. 2287366Domain d5jrdl_: 5jrd L: [330667]
        Other proteins in same PDB: d5jrds_, d5jrdt_
        automated match to d5a4il_
        complexed with cl, f3s, fco, mg, ni, sf3, sf4, so4
      2. 2287463Domain d5jrdm_: 5jrd M: [330764]
        Other proteins in same PDB: d5jrds_, d5jrdt_
        automated match to d5a4il_
        complexed with cl, f3s, fco, mg, ni, sf3, sf4, so4
    2. Domains for 5lmm:
      1. 2294592Domain d5lmml_: 5lmm L: [337893]
        Other proteins in same PDB: d5lmms_, d5lmmt_
        automated match to d5a4il_
        complexed with cl, f3s, fco, li, lmt, mg, ni, sf3, sf4, so4, trs; mutant
      2. 2294653Domain d5lmmm_: 5lmm M: [337954]
        Other proteins in same PDB: d5lmms_, d5lmmt_
        automated match to d5a4il_
        complexed with cl, f3s, fco, li, lmt, mg, ni, sf3, sf4, so4, trs; mutant
    3. Domains for 5lry:
      1. 2295602Domain d5lrym_: 5lry M: [338903]
        Other proteins in same PDB: d5lrys_, d5lryt_
        automated match to d5a4il_
        complexed with cl, f3s, fco, li, lmt, mg, ni, sf3, sf4, so4; mutant
      2. 2295603Domain d5lryl_: 5lry L: [338904]
        Other proteins in same PDB: d5lrys_, d5lryt_
        automated match to d5a4il_
        complexed with cl, f3s, fco, li, lmt, mg, ni, sf3, sf4, so4; mutant
  9. 2295294Methanothermococcus thermolithotrophicus [TaxId:523845] [338595] (5 PDB entries)
    1. Domains for 5odc:
      1. 2295295Domain d5odcf_: 5odc F: [338596]
        automated match to d3ze7b_
        complexed with 9s8, act, ca, fad, fes, gol, mg, na, nfu, pe3, sf4, trs
      2. 2295308Domain d5odcl_: 5odc L: [338609]
        automated match to d3ze7b_
        complexed with 9s8, act, ca, fad, fes, gol, mg, na, nfu, pe3, sf4, trs
    2. Domains for 5odh:
      1. 2295318Domain d5odhf_: 5odh F: [338619]
        automated match to d3ze7b_
        complexed with 9s8, act, com, fad, fe, fes, gol, nfu, pe3, sf4, tp7, trs
      2. 2295359Domain d5odhl_: 5odh L: [338660]
        automated match to d3ze7b_
        complexed with 9s8, act, com, fad, fe, fes, gol, nfu, pe3, sf4, tp7, trs
    3. Domains for 5odi:
      1. 2295314Domain d5odil_: 5odi L: [338615]
        automated match to d3ze7b_
        complexed with 9s8, act, com, fad, fe, fes, gol, nfu, pe3, sf4, trs
      2. 2295320Domain d5odif_: 5odi F: [338621]
        automated match to d3ze7b_
        complexed with 9s8, act, com, fad, fe, fes, gol, nfu, pe3, sf4, trs
    4. Domains for 5odq:
      1. 2295305Domain d5odqf_: 5odq F: [338606]
        automated match to d3ze7b_
        complexed with 9s8, 9sb, act, fad, fe, fes, gol, nfu, pe3, sf4, trs
      2. 2295307Domain d5odql_: 5odq L: [338608]
        automated match to d3ze7b_
        complexed with 9s8, 9sb, act, fad, fe, fes, gol, nfu, pe3, sf4, trs
    5. Domains for 5odr:
      1. 2295319Domain d5odrf_: 5odr F: [338620]
        automated match to d3ze7b_
        complexed with 9s8, act, com, fad, fe, fes, gol, nfu, pe3, sf4, so4, tp7
      2. 2295326Domain d5odrl_: 5odr L: [338627]
        automated match to d3ze7b_
        complexed with 9s8, act, com, fad, fe, fes, gol, nfu, pe3, sf4, so4, tp7

More info for Protein automated matches from e.18.1.0: automated matches

Timeline for Protein automated matches from e.18.1.0: automated matches: