SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2217451Class e: Multi-domain proteins (alpha and beta) [56572] (69 folds)
  3. 2222059Fold e.18: HydB/Nqo4-like [56761] (1 superfamily)
    3 domains: (1) all-alpha; (2&3) alpha+beta
  4. 2222060Superfamily e.18.1: HydB/Nqo4-like [56762] (3 families) (S)
  5. 2222201Family e.18.1.0: automated matches [191637] (1 protein)
    not a true family
  6. 2222202Protein automated matches [191173] (8 species)
    not a true protein

Species:

  1. 2222203Allochromatium vinosum [TaxId:1049] [189416] (1 PDB entry)
  2. 2222208Escherichia coli [TaxId:1403831] [279526] (3 PDB entries)
    1. Domains for 5a4f:
      1. 2222211Domain d5a4fl_: 5a4f L: [279534]
        Other proteins in same PDB: d5a4fs_, d5a4ft_
        automated match to d3uqyl_
        complexed with cl, f3s, fco, mg, ni, sf3, sf4, so4
      2. 2222212Domain d5a4fm_: 5a4f M: [279539]
        Other proteins in same PDB: d5a4fs_, d5a4ft_
        automated match to d3uqyl_
        complexed with cl, f3s, fco, mg, ni, sf3, sf4, so4
    2. Domains for 5a4i:
      1. 2222209Domain d5a4il_: 5a4i L: [279536]
        Other proteins in same PDB: d5a4is_, d5a4it_
        automated match to d3uqyl_
        complexed with cl, f3s, fco, lmt, mg, ni, sf3, sf4, so4
      2. 2222210Domain d5a4im_: 5a4i M: [279540]
        Other proteins in same PDB: d5a4is_, d5a4it_
        automated match to d3uqyl_
        complexed with cl, f3s, fco, lmt, mg, ni, sf3, sf4, so4
    3. Domains for 5a4m:
      1. 2222213Domain d5a4ml_: 5a4m L: [279533]
        Other proteins in same PDB: d5a4ms_, d5a4mt_
        automated match to d3uqyl_
        complexed with cl, f3s, mg, nfv, sf3, sf4
      2. 2222214Domain d5a4mm_: 5a4m M: [279537]
        Other proteins in same PDB: d5a4ms_, d5a4mt_
        automated match to d3uqyl_
        complexed with cl, f3s, mg, nfv, sf3, sf4
  3. 2222215Escherichia coli [TaxId:562] [195685] (5 PDB entries)
    1. Domains for 3uqy:
      1. 2222218Domain d3uqyl_: 3uqy L: [217495]
        Other proteins in same PDB: d3uqys_, d3uqyt_
        automated match to d3uscl_
        complexed with cl, f3s, f4s, fco, gol, lmt, mg, ni, sf4, so4
      2. 2222219Domain d3uqym_: 3uqy M: [217496]
        Other proteins in same PDB: d3uqys_, d3uqyt_
        automated match to d3uscl_
        complexed with cl, f3s, f4s, fco, gol, lmt, mg, ni, sf4, so4
    2. Domains for 3usc:
      1. 2222224Domain d3uscl_: 3usc L: [195687]
        Other proteins in same PDB: d3uscs_, d3usct_
        automated match to d3myrd_
        complexed with 3ni, cl, f3s, fco, li, lmt, mg, sf3, sf4, so4
      2. 2222225Domain d3uscm_: 3usc M: [195686]
        Other proteins in same PDB: d3uscs_, d3usct_
        automated match to d3myrd_
        complexed with 3ni, cl, f3s, fco, li, lmt, mg, sf3, sf4, so4
    3. Domains for 3use:
      1. 2222220Domain d3usel_: 3use L: [201106]
        Other proteins in same PDB: d3uses_, d3uset_
        automated match to d3uscl_
        complexed with 3ni, cl, f3s, f4s, fco, gol, li, lmt, mg, sf3, sf4, so4
      2. 2222221Domain d3usem_: 3use M: [195688]
        Other proteins in same PDB: d3uses_, d3uset_
        automated match to d3myrd_
        complexed with 3ni, cl, f3s, f4s, fco, gol, li, lmt, mg, sf3, sf4, so4
    4. Domains for 4ue3:
      1. 2222222Domain d4ue3l_: 4ue3 L: [268935]
        Other proteins in same PDB: d4ue3s_, d4ue3t_
        automated match to d3uqyl_
        complexed with cl, f3s, mg, nfv, sf3, sf4, so4
      2. 2222223Domain d4ue3m_: 4ue3 M: [268936]
        Other proteins in same PDB: d4ue3s_, d4ue3t_
        automated match to d3uqyl_
        complexed with cl, f3s, mg, nfv, sf3, sf4, so4
    5. Domains for 5adu:
      1. 2222216Domain d5adul_: 5adu L: [279541]
        Other proteins in same PDB: d5adus_, d5adut_
        automated match to d3uqyl_
        complexed with cl, f3s, fco, lmt, mg, ni, sf3, sf4, so4
      2. 2222217Domain d5adum_: 5adu M: [279542]
        Other proteins in same PDB: d5adus_, d5adut_
        automated match to d3uqyl_
        complexed with cl, f3s, fco, lmt, mg, ni, sf3, sf4, so4
  4. 2222226Hydrogenovibrio marinus [TaxId:28885] [196125] (3 PDB entries)
    1. Domains for 3ayx:
      1. 2222227Domain d3ayxa_: 3ayx A: [198975]
        Other proteins in same PDB: d3ayxb_, d3ayxd_
        automated match to d3ayyc_
        complexed with cmo, cyn, f3s, f4s, fe2, gol, mg, ni, o, sf4
      2. 2222228Domain d3ayxc_: 3ayx C: [198976]
        Other proteins in same PDB: d3ayxb_, d3ayxd_
        automated match to d3ayyc_
        complexed with cmo, cyn, f3s, f4s, fe2, gol, mg, ni, o, sf4
    2. Domains for 3ayy:
      1. 2222231Domain d3ayya_: 3ayy A: [196127]
        Other proteins in same PDB: d3ayyb_, d3ayyd_
        automated match to d3myrd_
        complexed with 3ni, cmo, cyn, f3s, fe2, gol, mg, o, sf3, sf4
      2. 2222232Domain d3ayyc_: 3ayy C: [196126]
        Other proteins in same PDB: d3ayyb_, d3ayyd_
        automated match to d3myrd_
        complexed with 3ni, cmo, cyn, f3s, fe2, gol, mg, o, sf3, sf4
    3. Domains for 3ayz:
      1. 2222229Domain d3ayza_: 3ayz A: [198977]
        Other proteins in same PDB: d3ayzb_, d3ayzd_
        automated match to d3ayyc_
        complexed with 3ni, cmo, cyn, f3s, f4s, fe2, gol, mg, o, sf3, sf4
      2. 2222230Domain d3ayzc_: 3ayz C: [198978]
        Other proteins in same PDB: d3ayzb_, d3ayzd_
        automated match to d3ayyc_
        complexed with 3ni, cmo, cyn, f3s, f4s, fe2, gol, mg, o, sf3, sf4
  5. 2222233Ralstonia eutropha [TaxId:381666] [196117] (5 PDB entries)
    1. Domain for 3rgw:
    2. Domain for 4iub:
    3. Domain for 4iuc:
    4. Domain for 4iud:
    5. Domain for 4ttt:
  6. 2269160Cupriavidus necator [TaxId:381666] [312466] (1 PDB entry)
  7. 2270075Cupriavidus necator [TaxId:106590] [313380] (1 PDB entry)
  8. 2287365Escherichia coli [TaxId:83333] [330666] (1 PDB entry)

More info for Protein automated matches from e.18.1.0: automated matches

Timeline for Protein automated matches from e.18.1.0: automated matches: