Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2217451Class e: Multi-domain proteins (alpha and beta) [56572] (69 folds)
  3. 2222239Fold e.19: HydA/Nqo6-like [56769] (1 superfamily)
    2 domains: (1) alpa/beta; (2) Fe-S cluster-bound
  4. 2222240Superfamily e.19.1: HydA/Nqo6-like [56770] (3 families) (S)
  5. 2222380Family e.19.1.0: automated matches [191636] (1 protein)
    not a true family
  6. 2222381Protein automated matches [191172] (7 species)
    not a true protein

Species:

  1. 2222382Allochromatium vinosum [TaxId:1049] [189415] (1 PDB entry)
  2. 2222387Escherichia coli [TaxId:1403831] [279531] (3 PDB entries)
    1. Domains for 5a4f:
      1. 2222390Domain d5a4fs_: 5a4f S: [280214]
        Other proteins in same PDB: d5a4fl_, d5a4fm_
        automated match to d3rgws_
        complexed with cl, f3s, fco, mg, ni, sf3, sf4, so4
      2. 2222391Domain d5a4ft_: 5a4f T: [280218]
        Other proteins in same PDB: d5a4fl_, d5a4fm_
        automated match to d3rgws_
        complexed with cl, f3s, fco, mg, ni, sf3, sf4, so4
    2. Domains for 5a4i:
      1. 2222388Domain d5a4is_: 5a4i S: [280227]
        Other proteins in same PDB: d5a4il_, d5a4im_
        automated match to d3rgws_
        complexed with cl, f3s, fco, lmt, mg, ni, sf3, sf4, so4
      2. 2222389Domain d5a4it_: 5a4i T: [280217]
        Other proteins in same PDB: d5a4il_, d5a4im_
        automated match to d3rgws_
        complexed with cl, f3s, fco, lmt, mg, ni, sf3, sf4, so4
    3. Domains for 5a4m:
      1. 2222392Domain d5a4ms_: 5a4m S: [279535]
        Other proteins in same PDB: d5a4ml_, d5a4mm_
        automated match to d3uqys_
        complexed with cl, f3s, mg, nfv, sf3, sf4
      2. 2222393Domain d5a4mt_: 5a4m T: [279538]
        Other proteins in same PDB: d5a4ml_, d5a4mm_
        automated match to d3uqys_
        complexed with cl, f3s, mg, nfv, sf3, sf4
  3. 2222394Escherichia coli [TaxId:562] [256126] (5 PDB entries)
    1. Domains for 3uqy:
      1. 2222397Domain d3uqys_: 3uqy S: [239873]
        Other proteins in same PDB: d3uqyl_, d3uqym_
        automated match to d3ayxb_
        complexed with cl, f3s, f4s, fco, gol, lmt, mg, ni, sf4, so4
      2. 2222398Domain d3uqyt_: 3uqy T: [239874]
        Other proteins in same PDB: d3uqyl_, d3uqym_
        automated match to d3ayxb_
        complexed with cl, f3s, f4s, fco, gol, lmt, mg, ni, sf4, so4
    2. Domains for 3usc:
      1. 2222403Domain d3uscs_: 3usc S: [239875]
        Other proteins in same PDB: d3uscl_, d3uscm_
        automated match to d3ayxb_
        complexed with 3ni, cl, f3s, fco, li, lmt, mg, sf3, sf4, so4
      2. 2222404Domain d3usct_: 3usc T: [239876]
        Other proteins in same PDB: d3uscl_, d3uscm_
        automated match to d3ayxb_
        complexed with 3ni, cl, f3s, fco, li, lmt, mg, sf3, sf4, so4
    3. Domains for 3use:
      1. 2222399Domain d3uses_: 3use S: [239877]
        Other proteins in same PDB: d3usel_, d3usem_
        automated match to d3ayxb_
        complexed with 3ni, cl, f3s, f4s, fco, gol, li, lmt, mg, sf3, sf4, so4
      2. 2222400Domain d3uset_: 3use T: [239878]
        Other proteins in same PDB: d3usel_, d3usem_
        automated match to d3ayxb_
        complexed with 3ni, cl, f3s, f4s, fco, gol, li, lmt, mg, sf3, sf4, so4
    4. Domains for 4ue3:
      1. 2222401Domain d4ue3s_: 4ue3 S: [268937]
        Other proteins in same PDB: d4ue3l_, d4ue3m_
        automated match to d3rgws_
        complexed with cl, f3s, mg, nfv, sf3, sf4, so4
      2. 2222402Domain d4ue3t_: 4ue3 T: [268940]
        Other proteins in same PDB: d4ue3l_, d4ue3m_
        automated match to d3rgws_
        complexed with cl, f3s, mg, nfv, sf3, sf4, so4
    5. Domains for 5adu:
      1. 2222395Domain d5adus_: 5adu S: [280233]
        Other proteins in same PDB: d5adul_, d5adum_
        automated match to d3rgws_
        complexed with cl, f3s, fco, lmt, mg, ni, sf3, sf4, so4
      2. 2222396Domain d5adut_: 5adu T: [280234]
        Other proteins in same PDB: d5adul_, d5adum_
        automated match to d3rgws_
        complexed with cl, f3s, fco, lmt, mg, ni, sf3, sf4, so4
  4. 2222405Hydrogenovibrio marinus [TaxId:28885] [189746] (4 PDB entries)
    1. Domains for 3ayx:
      1. 2222406Domain d3ayxb_: 3ayx B: [172384]
        Other proteins in same PDB: d3ayxa_, d3ayxc_
        automated match to d1yq9a1
        complexed with cmo, cyn, f3s, f4s, fe2, gol, mg, ni, o, sf4
      2. 2222407Domain d3ayxd_: 3ayx D: [172385]
        Other proteins in same PDB: d3ayxa_, d3ayxc_
        automated match to d1yq9a1
        complexed with cmo, cyn, f3s, f4s, fe2, gol, mg, ni, o, sf4
    2. Domains for 3ayy:
      1. 2222410Domain d3ayyb_: 3ayy B: [172386]
        Other proteins in same PDB: d3ayya_, d3ayyc_
        automated match to d1yq9a1
        complexed with 3ni, cmo, cyn, f3s, fe2, gol, mg, o, sf3, sf4
      2. 2222411Domain d3ayyd_: 3ayy D: [172387]
        Other proteins in same PDB: d3ayya_, d3ayyc_
        automated match to d1yq9a1
        complexed with 3ni, cmo, cyn, f3s, fe2, gol, mg, o, sf3, sf4
    3. Domains for 3ayz:
      1. 2222408Domain d3ayzb_: 3ayz B: [172388]
        Other proteins in same PDB: d3ayza_, d3ayzc_
        automated match to d1yq9a1
        complexed with 3ni, cmo, cyn, f3s, f4s, fe2, gol, mg, o, sf3, sf4
      2. 2222409Domain d3ayzd_: 3ayz D: [172389]
        Other proteins in same PDB: d3ayza_, d3ayzc_
        automated match to d1yq9a1
        complexed with 3ni, cmo, cyn, f3s, f4s, fe2, gol, mg, o, sf3, sf4
    4. Domains for 5y34:
      1. 2294796Domain d5y34b_: 5y34 B: [338097]
        Other proteins in same PDB: d5y34a_, d5y34c_
        automated match to d3ayxb_
        complexed with 3ni, f3s, fco, gol, mg, o, sf3, sf4
      2. 2294813Domain d5y34d_: 5y34 D: [338114]
        Other proteins in same PDB: d5y34a_, d5y34c_
        automated match to d3ayxb_
        complexed with 3ni, f3s, fco, gol, mg, o, sf3, sf4
  5. 2222412Ralstonia eutropha [TaxId:381666] [256057] (5 PDB entries)
    1. Domain for 3rgw:
    2. Domain for 4iub:
    3. Domain for 4iuc:
    4. Domain for 4iud:
    5. Domain for 4ttt:
  6. 2270091Cupriavidus necator [TaxId:106590] [313396] (1 PDB entry)
  7. 2287382Escherichia coli [TaxId:199310] [330683] (3 PDB entries)
    1. Domains for 5jrd:
      1. 2287383Domain d5jrds_: 5jrd S: [330684]
        Other proteins in same PDB: d5jrdl_, d5jrdm_
        automated match to d3rgws_
        complexed with cl, f3s, fco, mg, ni, sf3, sf4, so4
      2. 2287384Domain d5jrdt_: 5jrd T: [330685]
        Other proteins in same PDB: d5jrdl_, d5jrdm_
        automated match to d3rgws_
        complexed with cl, f3s, fco, mg, ni, sf3, sf4, so4
    2. Domains for 5lmm:
      1. 2294542Domain d5lmms_: 5lmm S: [337843]
        Other proteins in same PDB: d5lmml_, d5lmmm_
        automated match to d3rgws_
        complexed with cl, f3s, fco, li, lmt, mg, ni, sf3, sf4, so4, trs; mutant
      2. 2294584Domain d5lmmt_: 5lmm T: [337885]
        Other proteins in same PDB: d5lmml_, d5lmmm_
        automated match to d3rgws_
        complexed with cl, f3s, fco, li, lmt, mg, ni, sf3, sf4, so4, trs; mutant
    3. Domains for 5lry:
      1. 2295605Domain d5lrys_: 5lry S: [338906]
        Other proteins in same PDB: d5lryl_, d5lrym_
        automated match to d3rgws_
        complexed with cl, f3s, fco, li, lmt, mg, ni, sf3, sf4, so4; mutant
      2. 2295614Domain d5lryt_: 5lry T: [338915]
        Other proteins in same PDB: d5lryl_, d5lrym_
        automated match to d3rgws_
        complexed with cl, f3s, fco, li, lmt, mg, ni, sf3, sf4, so4; mutant

More info for Protein automated matches from e.19.1.0: automated matches

Timeline for Protein automated matches from e.19.1.0: automated matches: