Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2568173Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds)
  3. 2573496Fold e.19: HydA/Nqo6-like [56769] (1 superfamily)
    2 domains: (1) alpa/beta; (2) Fe-S cluster-bound
  4. 2573497Superfamily e.19.1: HydA/Nqo6-like [56770] (3 families) (S)
  5. 2573645Family e.19.1.0: automated matches [191636] (1 protein)
    not a true family
  6. 2573646Protein automated matches [191172] (9 species)
    not a true protein

Species:

  1. 2573647Allochromatium vinosum [TaxId:1049] [189415] (1 PDB entry)
  2. 2573652Cupriavidus necator [TaxId:106590] [313396] (1 PDB entry)
  3. 2573654Escherichia coli [TaxId:1403831] [279531] (3 PDB entries)
    1. Domains for 5a4f:
      1. 2573657Domain d5a4fs_: 5a4f S: [280214]
        Other proteins in same PDB: d5a4fl_, d5a4fm_
        automated match to d3rgws_
        complexed with cl, f3s, fco, mg, ni, sf3, sf4, so4
      2. 2573658Domain d5a4ft_: 5a4f T: [280218]
        Other proteins in same PDB: d5a4fl_, d5a4fm_
        automated match to d3rgws_
        complexed with cl, f3s, fco, mg, ni, sf3, sf4, so4
    2. Domains for 5a4i:
      1. 2573655Domain d5a4is_: 5a4i S: [280227]
        Other proteins in same PDB: d5a4il_, d5a4im_
        automated match to d3rgws_
        complexed with cl, f3s, fco, lmt, mg, ni, sf3, sf4, so4
      2. 2573656Domain d5a4it_: 5a4i T: [280217]
        Other proteins in same PDB: d5a4il_, d5a4im_
        automated match to d3rgws_
        complexed with cl, f3s, fco, lmt, mg, ni, sf3, sf4, so4
    3. Domains for 5a4m:
      1. 2573659Domain d5a4ms_: 5a4m S: [279535]
        Other proteins in same PDB: d5a4ml_, d5a4mm_
        automated match to d3uqys_
        complexed with cl, f3s, mg, nfv, sf3, sf4
      2. 2573660Domain d5a4mt_: 5a4m T: [279538]
        Other proteins in same PDB: d5a4ml_, d5a4mm_
        automated match to d3uqys_
        complexed with cl, f3s, mg, nfv, sf3, sf4
  4. 2573661Escherichia coli [TaxId:199310] [330683] (3 PDB entries)
    1. Domains for 5jrd:
      1. 2573664Domain d5jrds_: 5jrd S: [330684]
        Other proteins in same PDB: d5jrdl_, d5jrdm_
        automated match to d3rgws_
        complexed with cl, f3s, fco, mg, ni, sf3, sf4, so4
      2. 2573665Domain d5jrdt_: 5jrd T: [330685]
        Other proteins in same PDB: d5jrdl_, d5jrdm_
        automated match to d3rgws_
        complexed with cl, f3s, fco, mg, ni, sf3, sf4, so4
    2. Domains for 5lmm:
      1. 2573662Domain d5lmms_: 5lmm S: [337843]
        Other proteins in same PDB: d5lmml_, d5lmmm_
        automated match to d3rgws_
        complexed with cl, f3s, fco, li, lmt, mg, ni, sf3, sf4, so4, trs; mutant
      2. 2573663Domain d5lmmt_: 5lmm T: [337885]
        Other proteins in same PDB: d5lmml_, d5lmmm_
        automated match to d3rgws_
        complexed with cl, f3s, fco, li, lmt, mg, ni, sf3, sf4, so4, trs; mutant
    3. Domains for 5lry:
      1. 2573666Domain d5lrys_: 5lry S: [338906]
        Other proteins in same PDB: d5lryl_, d5lrym_
        automated match to d3rgws_
        complexed with cl, f3s, fco, li, lmt, mg, ni, sf3, sf4, so4; mutant
      2. 2573667Domain d5lryt_: 5lry T: [338915]
        Other proteins in same PDB: d5lryl_, d5lrym_
        automated match to d3rgws_
        complexed with cl, f3s, fco, li, lmt, mg, ni, sf3, sf4, so4; mutant
  5. 2573668Escherichia coli [TaxId:562] [256126] (6 PDB entries)
    1. Domains for 3uqy:
      1. 2573671Domain d3uqys_: 3uqy S: [239873]
        Other proteins in same PDB: d3uqyl_, d3uqym_
        automated match to d3ayxb_
        complexed with cl, f3s, f4s, fco, gol, lmt, mg, ni, sf4, so4
      2. 2573672Domain d3uqyt_: 3uqy T: [239874]
        Other proteins in same PDB: d3uqyl_, d3uqym_
        automated match to d3ayxb_
        complexed with cl, f3s, f4s, fco, gol, lmt, mg, ni, sf4, so4
    2. Domains for 3usc:
      1. 2573677Domain d3uscs_: 3usc S: [239875]
        Other proteins in same PDB: d3uscl_, d3uscm_
        automated match to d3ayxb_
        complexed with 3ni, cl, f3s, fco, li, lmt, mg, sf3, sf4, so4
      2. 2573678Domain d3usct_: 3usc T: [239876]
        Other proteins in same PDB: d3uscl_, d3uscm_
        automated match to d3ayxb_
        complexed with 3ni, cl, f3s, fco, li, lmt, mg, sf3, sf4, so4
    3. Domains for 3use:
      1. 2573673Domain d3uses_: 3use S: [239877]
        Other proteins in same PDB: d3usel_, d3usem_
        automated match to d3ayxb_
        complexed with 3ni, cl, f3s, f4s, fco, gol, li, lmt, mg, sf3, sf4, so4
      2. 2573674Domain d3uset_: 3use T: [239878]
        Other proteins in same PDB: d3usel_, d3usem_
        automated match to d3ayxb_
        complexed with 3ni, cl, f3s, f4s, fco, gol, li, lmt, mg, sf3, sf4, so4
    4. Domains for 4ue3:
      1. 2573675Domain d4ue3s_: 4ue3 S: [268937]
        Other proteins in same PDB: d4ue3l_, d4ue3m_
        automated match to d3rgws_
        complexed with cl, f3s, mg, nfv, sf3, sf4, so4
      2. 2573676Domain d4ue3t_: 4ue3 T: [268940]
        Other proteins in same PDB: d4ue3l_, d4ue3m_
        automated match to d3rgws_
        complexed with cl, f3s, mg, nfv, sf3, sf4, so4
    5. Domains for 5adu:
      1. 2573669Domain d5adus_: 5adu S: [280233]
        Other proteins in same PDB: d5adul_, d5adum_
        automated match to d3rgws_
        complexed with cl, f3s, fco, lmt, mg, ni, sf3, sf4, so4
      2. 2573670Domain d5adut_: 5adu T: [280234]
        Other proteins in same PDB: d5adul_, d5adum_
        automated match to d3rgws_
        complexed with cl, f3s, fco, lmt, mg, ni, sf3, sf4, so4
    6. Domains for 6en9:
      1. 3051093Domain d6en9t_: 6en9 T: [351155]
        Other proteins in same PDB: d6en9l_, d6en9m_
        automated match to d3myra_
        complexed with f3s, fco, mg, ni, sf4, so4
      2. 3051095Domain d6en9s_: 6en9 S: [351157]
        Other proteins in same PDB: d6en9l_, d6en9m_
        automated match to d3myra_
        complexed with f3s, fco, mg, ni, sf4, so4
  6. 2573679Hydrogenovibrio marinus [TaxId:28885] [189746] (3 PDB entries)
    1. Domains for 3ayx:
      1. 2573680Domain d3ayxb_: 3ayx B: [172384]
        Other proteins in same PDB: d3ayxa_, d3ayxc_
        automated match to d1yq9a1
        complexed with cmo, cyn, f3s, f4s, fe2, gol, mg, ni, o, sf4
      2. 2573681Domain d3ayxd_: 3ayx D: [172385]
        Other proteins in same PDB: d3ayxa_, d3ayxc_
        automated match to d1yq9a1
        complexed with cmo, cyn, f3s, f4s, fe2, gol, mg, ni, o, sf4
    2. Domains for 3ayz:
      1. 2573682Domain d3ayzb_: 3ayz B: [172388]
        Other proteins in same PDB: d3ayza_, d3ayzc_
        automated match to d1yq9a1
        complexed with 3ni, cmo, cyn, f3s, f4s, fe2, gol, mg, o, sf3, sf4
      2. 2573683Domain d3ayzd_: 3ayz D: [172389]
        Other proteins in same PDB: d3ayza_, d3ayzc_
        automated match to d1yq9a1
        complexed with 3ni, cmo, cyn, f3s, f4s, fe2, gol, mg, o, sf3, sf4
    3. Domains for 5y34:
      1. 2573684Domain d5y34b_: 5y34 B: [338097]
        Other proteins in same PDB: d5y34a_, d5y34c_
        automated match to d3ayxb_
        complexed with 3ni, f3s, fco, gol, mg, o, sf3, sf4
      2. 2573685Domain d5y34d_: 5y34 D: [338114]
        Other proteins in same PDB: d5y34a_, d5y34c_
        automated match to d3ayxb_
        complexed with 3ni, f3s, fco, gol, mg, o, sf3, sf4
  7. 2573686Ralstonia eutropha [TaxId:381666] [256057] (8 PDB entries)
    1. Domain for 3rgw:
    2. Domain for 4iub:
    3. Domain for 4iuc:
    4. Domain for 4iud:
    5. Domain for 4ttt:
    6. Domain for 5mdj:
    7. Domain for 5mdk:
    8. Domain for 5mdl:
      • 3046699Domain d5mdls_: 5mdl S: [346761]
        Other proteins in same PDB: d5mdll_
        automated match to d3rgws_
        complexed with cl, f3s, f4s, mg, nfv, o, oxy, peg, sf4
  8. 3051131Escherichia coli [TaxId:585055] [351193] (1 PDB entry)
  9. 3051140Escherichia coli [TaxId:83333] [351202] (1 PDB entry)

More info for Protein automated matches from e.19.1.0: automated matches

Timeline for Protein automated matches from e.19.1.0: automated matches: