SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2158219Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 2159798Superfamily d.15.4: 2Fe-2S ferredoxin-like [54292] (3 families) (S)
  5. 2160171Family d.15.4.0: automated matches [191632] (1 protein)
    not a true family
  6. 2160172Protein automated matches [191164] (21 species)
    not a true protein

Species:

  1. 2160173Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [261090] (2 PDB entries)
    1. Domain for 2mjd:
    2. Domain for 2mje:
  2. 2160176Clostridium pasteurianum [TaxId:1501] [279203] (6 PDB entries)
    1. Domains for 4xdc:
      1. 2160179Domain d4xdca1: 4xdc A:1-126 [279363]
        Other proteins in same PDB: d4xdca2, d4xdca3, d4xdca4, d4xdcb2, d4xdcb3, d4xdcb4
        automated match to d3c8ya2
        complexed with 402, fes, mg, sf4
      2. 2160180Domain d4xdcb1: 4xdc B:2-126 [279366]
        Other proteins in same PDB: d4xdca2, d4xdca3, d4xdca4, d4xdcb2, d4xdcb3, d4xdcb4
        automated match to d3c8ya2
        complexed with 402, fes, mg, sf4
    2. Domains for 4xdd:
      1. 2160177Domain d4xdda1: 4xdd A:1-126 [279360]
        Other proteins in same PDB: d4xdda2, d4xdda3, d4xdda4, d4xddb2, d4xddb3, d4xddb4
        automated match to d3c8ya2
        complexed with cl, fes, gol, mg, sf4
      2. 2160178Domain d4xddb1: 4xdd B:1-126 [279357]
        Other proteins in same PDB: d4xdda2, d4xdda3, d4xdda4, d4xddb2, d4xddb3, d4xddb4
        automated match to d3c8ya2
        complexed with cl, fes, gol, mg, sf4
    3. Domains for 5byq:
      1. 2160181Domain d5byqa1: 5byq A:2-126 [279210]
        Other proteins in same PDB: d5byqa2, d5byqa3, d5byqa4, d5byqb2, d5byqb3, d5byqb4
        automated match to d3c8ya2
        complexed with 4wv, fes, gol, mg, sf4
      2. 2160182Domain d5byqb1: 5byq B:2-126 [279213]
        Other proteins in same PDB: d5byqa2, d5byqa3, d5byqa4, d5byqb2, d5byqb3, d5byqb4
        automated match to d3c8ya2
        complexed with 4wv, fes, gol, mg, sf4
    4. Domains for 5byr:
      1. 2160183Domain d5byra1: 5byr A:2-126 [279219]
        Other proteins in same PDB: d5byra2, d5byra3, d5byrb2, d5byrb3
        automated match to d3c8ya2
        complexed with 4ww, fes, gol, mg, sf4
      2. 2160184Domain d5byrb1: 5byr B:2-126 [279216]
        Other proteins in same PDB: d5byra2, d5byra3, d5byrb2, d5byrb3
        automated match to d3c8ya2
        complexed with 4ww, fes, gol, mg, sf4
    5. Domains for 5bys:
      1. 2160185Domain d5bysa1: 5bys A:2-126 [279222]
        Other proteins in same PDB: d5bysa2, d5bysa3, d5bysa4, d5bysb2, d5bysb3
        automated match to d3c8ya2
        complexed with 4wx, fes, mg, sf4
      2. 2160186Domain d5bysb1: 5bys B:2-126 [279204]
        Other proteins in same PDB: d5bysa2, d5bysa3, d5bysa4, d5bysb2, d5bysb3
        automated match to d3c8ya2
        complexed with 4wx, fes, mg, sf4
    6. Domains for 5la3:
      1. 2292337Domain d5la3b1: 5la3 B:3-126 [335638]
        Other proteins in same PDB: d5la3a2, d5la3a3, d5la3a4, d5la3b2, d5la3b3, d5la3b4
        automated match to d3c8ya2
        complexed with 402, fes, mg, sf4
      2. 2292342Domain d5la3a1: 5la3 A:2-126 [335643]
        Other proteins in same PDB: d5la3a2, d5la3a3, d5la3a4, d5la3b2, d5la3b3, d5la3b4
        automated match to d3c8ya2
        complexed with 402, fes, mg, sf4
  3. 2160187Desulfovibrio gigas [TaxId:879] [311144] (1 PDB entry)
  4. 2160189Ehrlichia chaffeensis [TaxId:205920] [311224] (1 PDB entry)
  5. 2160191Eubacterium barkeri [TaxId:1528] [225695] (1 PDB entry)
  6. 2160194Fission yeast (Schizosaccharomyces pombe) [TaxId:4896] [189445] (1 PDB entry)
  7. 2160197Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [236409] (2 PDB entries)
    1. Domain for 2mh7:
    2. Domain for 4itk:
  8. 2160200Human (Homo sapiens) [TaxId:9606] [189894] (1 PDB entry)
  9. 2160203Novosphingobium aromaticivorans [TaxId:279238] [189373] (1 PDB entry)
  10. 2160209Pig (Sus scrofa) [TaxId:9823] [255742] (5 PDB entries)
    1. Domain for 3ae1:
    2. Domain for 3ae2:
    3. Domain for 3aeb:
    4. Domain for 4ytp:
    5. Domain for 4yxd:
  11. 2160214Pig roundworm (Ascaris suum) [TaxId:6253] [256141] (8 PDB entries)
    1. Domains for 3vr8:
      1. 2160217Domain d3vr8b1: 3vr8 B:33-138 [250651]
        Other proteins in same PDB: d3vr8b2, d3vr8f2
        automated match to d1zoyb1
        complexed with eph, f3s, fad, fes, hem, mli, rqx, sf4
      2. 2160218Domain d3vr8f1: 3vr8 F:33-138 [250653]
        Other proteins in same PDB: d3vr8b2, d3vr8f2
        automated match to d1zoyb1
        complexed with eph, f3s, fad, fes, hem, mli, rqx, sf4
    2. Domains for 3vr9:
      1. 2160227Domain d3vr9b1: 3vr9 B:33-138 [250655]
        Other proteins in same PDB: d3vr9b2, d3vr9f2
        automated match to d1zoyb1
        complexed with eph, f3s, fad, fes, ftn, hem, mli, sf4
      2. 2160228Domain d3vr9f1: 3vr9 F:33-138 [250657]
        Other proteins in same PDB: d3vr9b2, d3vr9f2
        automated match to d1zoyb1
        complexed with eph, f3s, fad, fes, ftn, hem, mli, sf4
    3. Domains for 3vrb:
      1. 2160223Domain d3vrbb1: 3vrb B:33-138 [250659]
        Other proteins in same PDB: d3vrbb2, d3vrbf2
        automated match to d1zoyb1
        complexed with eph, f3s, fad, fes, ftn, fum, hem, sf4
      2. 2160224Domain d3vrbf1: 3vrb F:33-138 [250661]
        Other proteins in same PDB: d3vrbb2, d3vrbf2
        automated match to d1zoyb1
        complexed with eph, f3s, fad, fes, ftn, fum, hem, sf4
    4. Domains for 4ysx:
      1. 2160215Domain d4ysxb1: 4ysx B:33-138 [275741]
        Other proteins in same PDB: d4ysxb2, d4ysxf2
        automated match to d3vrbb1
        complexed with e23, eph, f3s, fad, fes, hem, mli, sf4
      2. 2160216Domain d4ysxf1: 4ysx F:31-138 [275743]
        Other proteins in same PDB: d4ysxb2, d4ysxf2
        automated match to d3vrbb1
        complexed with e23, eph, f3s, fad, fes, hem, mli, sf4
    5. Domains for 4ysy:
      1. 2160225Domain d4ysyb1: 4ysy B:33-138 [275737]
        Other proteins in same PDB: d4ysyb2, d4ysyf2
        automated match to d3vrbb1
        complexed with e24, eph, f3s, fad, fes, hem, mli, sf4
      2. 2160226Domain d4ysyf1: 4ysy F:33-138 [275739]
        Other proteins in same PDB: d4ysyb2, d4ysyf2
        automated match to d3vrbb1
        complexed with e24, eph, f3s, fad, fes, hem, mli, sf4
    6. Domains for 4ytn:
      1. 2160221Domain d4ytnb1: 4ytn B:33-138 [275747]
        Other proteins in same PDB: d4ytnb2, d4ytnf2
        automated match to d3vrbb1
        complexed with f3s, fad, fd8, fes, hem, mli, sf4
      2. 2160222Domain d4ytnf1: 4ytn F:33-138 [275750]
        Other proteins in same PDB: d4ytnb2, d4ytnf2
        automated match to d3vrbb1
        complexed with f3s, fad, fd8, fes, hem, mli, sf4
    7. Domains for 5c2t:
      1. 2160219Domain d5c2tb1: 5c2t B:33-138 [275580]
        Other proteins in same PDB: d5c2tb2, d5c2tf2
        automated match to d3vrbb1
        complexed with 4yp, eph, f3s, fad, fes, hem, mli, sf4
      2. 2160220Domain d5c2tf1: 5c2t F:33-138 [275582]
        Other proteins in same PDB: d5c2tb2, d5c2tf2
        automated match to d3vrbb1
        complexed with 4yp, eph, f3s, fad, fes, hem, mli, sf4
    8. Domains for 5c3j:
      1. 2275404Domain d5c3jb1: 5c3j B:33-138 [318705]
        Other proteins in same PDB: d5c3jb2, d5c3jf2
        automated match to d4ysxb1
        complexed with eph, f3s, fad, fes, hem, mli, sf4, uq1
      2. 2275531Domain d5c3jf1: 5c3j F:33-138 [318832]
        Other proteins in same PDB: d5c3jb2, d5c3jf2
        automated match to d4ysxb1
        complexed with eph, f3s, fad, fes, hem, mli, sf4, uq1
  12. 2160229Pseudomonas putida [TaxId:303] [189910] (1 PDB entry)
  13. 2160231Rhodobacter capsulatus [TaxId:1061] [255635] (2 PDB entries)
    1. Domains for 2w3r:
      1. 2160236Domain d2w3ra1: 2w3r A:1-84 [238896]
        Other proteins in same PDB: d2w3ra2, d2w3ra3, d2w3ra4, d2w3rb1, d2w3rb2, d2w3rc2, d2w3rc3, d2w3rc4, d2w3rd1, d2w3rd2, d2w3re2, d2w3re3, d2w3re4, d2w3rf1, d2w3rf2, d2w3rg2, d2w3rg3, d2w3rg4, d2w3rh1, d2w3rh2
        automated match to d1jroa2
        complexed with ca, fad, fes, hpa, mom, mte
      2. 2160237Domain d2w3rc1: 2w3r C:1-84 [238900]
        Other proteins in same PDB: d2w3ra2, d2w3ra3, d2w3ra4, d2w3rb1, d2w3rb2, d2w3rc2, d2w3rc3, d2w3rc4, d2w3rd1, d2w3rd2, d2w3re2, d2w3re3, d2w3re4, d2w3rf1, d2w3rf2, d2w3rg2, d2w3rg3, d2w3rg4, d2w3rh1, d2w3rh2
        automated match to d1jroa2
        complexed with ca, fad, fes, hpa, mom, mte
      3. 2160238Domain d2w3re1: 2w3r E:1-84 [238904]
        Other proteins in same PDB: d2w3ra2, d2w3ra3, d2w3ra4, d2w3rb1, d2w3rb2, d2w3rc2, d2w3rc3, d2w3rc4, d2w3rd1, d2w3rd2, d2w3re2, d2w3re3, d2w3re4, d2w3rf1, d2w3rf2, d2w3rg2, d2w3rg3, d2w3rg4, d2w3rh1, d2w3rh2
        automated match to d1jroa2
        complexed with ca, fad, fes, hpa, mom, mte
      4. 2160239Domain d2w3rg1: 2w3r G:1-84 [238908]
        Other proteins in same PDB: d2w3ra2, d2w3ra3, d2w3ra4, d2w3rb1, d2w3rb2, d2w3rc2, d2w3rc3, d2w3rc4, d2w3rd1, d2w3rd2, d2w3re2, d2w3re3, d2w3re4, d2w3rf1, d2w3rf2, d2w3rg2, d2w3rg3, d2w3rg4, d2w3rh1, d2w3rh2
        automated match to d1jroa2
        complexed with ca, fad, fes, hpa, mom, mte
    2. Domains for 2w3s:
      1. 2160232Domain d2w3sa1: 2w3s A:1-84 [238912]
        Other proteins in same PDB: d2w3sa2, d2w3sa3, d2w3sa4, d2w3sb1, d2w3sb2, d2w3sc2, d2w3sc3, d2w3sc4, d2w3sd1, d2w3sd2, d2w3se2, d2w3se3, d2w3se4, d2w3sf1, d2w3sf2, d2w3sg2, d2w3sg3, d2w3sg4, d2w3sh1, d2w3sh2
        automated match to d1jroa2
        complexed with ca, fad, fes, mom, mte, xan
      2. 2160233Domain d2w3sc1: 2w3s C:1-84 [238916]
        Other proteins in same PDB: d2w3sa2, d2w3sa3, d2w3sa4, d2w3sb1, d2w3sb2, d2w3sc2, d2w3sc3, d2w3sc4, d2w3sd1, d2w3sd2, d2w3se2, d2w3se3, d2w3se4, d2w3sf1, d2w3sf2, d2w3sg2, d2w3sg3, d2w3sg4, d2w3sh1, d2w3sh2
        automated match to d1jroa2
        complexed with ca, fad, fes, mom, mte, xan
      3. 2160234Domain d2w3se1: 2w3s E:1-84 [238920]
        Other proteins in same PDB: d2w3sa2, d2w3sa3, d2w3sa4, d2w3sb1, d2w3sb2, d2w3sc2, d2w3sc3, d2w3sc4, d2w3sd1, d2w3sd2, d2w3se2, d2w3se3, d2w3se4, d2w3sf1, d2w3sf2, d2w3sg2, d2w3sg3, d2w3sg4, d2w3sh1, d2w3sh2
        automated match to d1jroa2
        complexed with ca, fad, fes, mom, mte, xan
      4. 2160235Domain d2w3sg1: 2w3s G:1-84 [238924]
        Other proteins in same PDB: d2w3sa2, d2w3sa3, d2w3sa4, d2w3sb1, d2w3sb2, d2w3sc2, d2w3sc3, d2w3sc4, d2w3sd1, d2w3sd2, d2w3se2, d2w3se3, d2w3se4, d2w3sf1, d2w3sf2, d2w3sg2, d2w3sg3, d2w3sg4, d2w3sh1, d2w3sh2
        automated match to d1jroa2
        complexed with ca, fad, fes, mom, mte, xan
  14. 2160240Rhodopseudomonas palustris [TaxId:1076] [225824] (1 PDB entry)
  15. 2160242Rhodopseudomonas palustris [TaxId:316058] [260314] (1 PDB entry)
  16. 2160245Thermus thermophilus HB8 [TaxId:300852] [255888] (3 PDB entries)
    1. Domains for 3i9v:
      1. 2160248Domain d3i9v31: 3i9v 3:1-95 [246755]
        Other proteins in same PDB: d3i9v11, d3i9v12, d3i9v13, d3i9v2_, d3i9v32, d3i9v33, d3i9v34, d3i9v4_, d3i9v5_, d3i9v6_, d3i9v7_, d3i9v9_, d3i9va1, d3i9va2, d3i9va3, d3i9vb_, d3i9vc2, d3i9vc3, d3i9vc4, d3i9vd_, d3i9ve_, d3i9vf_, d3i9vg_, d3i9vh_
        automated match to d2fug33
        complexed with ca, fes, fmn, mn, sf4
      2. 2160249Domain d3i9vc1: 3i9v C:1-95 [246768]
        Other proteins in same PDB: d3i9v11, d3i9v12, d3i9v13, d3i9v2_, d3i9v32, d3i9v33, d3i9v34, d3i9v4_, d3i9v5_, d3i9v6_, d3i9v7_, d3i9v9_, d3i9va1, d3i9va2, d3i9va3, d3i9vb_, d3i9vc2, d3i9vc3, d3i9vc4, d3i9vd_, d3i9ve_, d3i9vf_, d3i9vg_, d3i9vh_
        automated match to d2fug33
        complexed with ca, fes, fmn, mn, sf4
    2. Domains for 3iam:
      1. 2160246Domain d3iam31: 3iam 3:1-95 [246781]
        Other proteins in same PDB: d3iam11, d3iam12, d3iam13, d3iam2_, d3iam32, d3iam33, d3iam34, d3iam4_, d3iam5_, d3iam6_, d3iam7_, d3iam9_, d3iama1, d3iama2, d3iama3, d3iamb_, d3iamc2, d3iamc3, d3iamc4, d3iamd_, d3iame_, d3iamf_, d3iamg_, d3iamh_
        automated match to d2fug33
        complexed with ca, fes, fmn, mg, nai, sf4
      2. 2160247Domain d3iamc1: 3iam C:1-95 [246794]
        Other proteins in same PDB: d3iam11, d3iam12, d3iam13, d3iam2_, d3iam32, d3iam33, d3iam34, d3iam4_, d3iam5_, d3iam6_, d3iam7_, d3iam9_, d3iama1, d3iama2, d3iama3, d3iamb_, d3iamc2, d3iamc3, d3iamc4, d3iamd_, d3iame_, d3iamf_, d3iamg_, d3iamh_
        automated match to d2fug33
        complexed with ca, fes, fmn, mg, nai, sf4
    3. Domains for 3ias:
      1. 2160250Domain d3ias31: 3ias 3:1-95 [246847]
        Other proteins in same PDB: d3ias11, d3ias12, d3ias13, d3ias2_, d3ias32, d3ias33, d3ias34, d3ias4_, d3ias5_, d3ias6_, d3ias7_, d3ias9_, d3iasa1, d3iasa2, d3iasa3, d3iasb_, d3iasc2, d3iasc3, d3iasc4, d3iasd_, d3iase_, d3iasf_, d3iasg_, d3iash_, d3iasj1, d3iasj2, d3iasj3, d3iask_, d3iasl2, d3iasl3, d3iasl4, d3iasm_, d3iasn_, d3iaso_, d3iasp_, d3iasq_, d3iass1, d3iass2, d3iass3, d3iast_, d3iasu2, d3iasu3, d3iasu4, d3iasv_, d3iasw_, d3iasx_, d3iasy_, d3iasz_
        automated match to d2fug33
        complexed with ca, fes, fmn, sf4
      2. 2160251Domain d3iasc1: 3ias C:1-95 [246860]
        Other proteins in same PDB: d3ias11, d3ias12, d3ias13, d3ias2_, d3ias32, d3ias33, d3ias34, d3ias4_, d3ias5_, d3ias6_, d3ias7_, d3ias9_, d3iasa1, d3iasa2, d3iasa3, d3iasb_, d3iasc2, d3iasc3, d3iasc4, d3iasd_, d3iase_, d3iasf_, d3iasg_, d3iash_, d3iasj1, d3iasj2, d3iasj3, d3iask_, d3iasl2, d3iasl3, d3iasl4, d3iasm_, d3iasn_, d3iaso_, d3iasp_, d3iasq_, d3iass1, d3iass2, d3iass3, d3iast_, d3iasu2, d3iasu3, d3iasu4, d3iasv_, d3iasw_, d3iasx_, d3iasy_, d3iasz_
        automated match to d2fug33
        complexed with ca, fes, fmn, sf4
      3. 2160252Domain d3iasl1: 3ias L:1-95 [246873]
        Other proteins in same PDB: d3ias11, d3ias12, d3ias13, d3ias2_, d3ias32, d3ias33, d3ias34, d3ias4_, d3ias5_, d3ias6_, d3ias7_, d3ias9_, d3iasa1, d3iasa2, d3iasa3, d3iasb_, d3iasc2, d3iasc3, d3iasc4, d3iasd_, d3iase_, d3iasf_, d3iasg_, d3iash_, d3iasj1, d3iasj2, d3iasj3, d3iask_, d3iasl2, d3iasl3, d3iasl4, d3iasm_, d3iasn_, d3iaso_, d3iasp_, d3iasq_, d3iass1, d3iass2, d3iass3, d3iast_, d3iasu2, d3iasu3, d3iasu4, d3iasv_, d3iasw_, d3iasx_, d3iasy_, d3iasz_
        automated match to d2fug33
        complexed with ca, fes, fmn, sf4
      4. 2160253Domain d3iasu1: 3ias U:1-95 [246886]
        Other proteins in same PDB: d3ias11, d3ias12, d3ias13, d3ias2_, d3ias32, d3ias33, d3ias34, d3ias4_, d3ias5_, d3ias6_, d3ias7_, d3ias9_, d3iasa1, d3iasa2, d3iasa3, d3iasb_, d3iasc2, d3iasc3, d3iasc4, d3iasd_, d3iase_, d3iasf_, d3iasg_, d3iash_, d3iasj1, d3iasj2, d3iasj3, d3iask_, d3iasl2, d3iasl3, d3iasl4, d3iasm_, d3iasn_, d3iaso_, d3iasp_, d3iasq_, d3iass1, d3iass2, d3iass3, d3iast_, d3iasu2, d3iasu3, d3iasu4, d3iasv_, d3iasw_, d3iasx_, d3iasy_, d3iasz_
        automated match to d2fug33
        complexed with ca, fes, fmn, sf4
  17. 2269072Sulfolobus tokodaii [TaxId:273063] [312378] (1 PDB entry)
  18. 2278757Arabidopsis thaliana [TaxId:3702] [322058] (1 PDB entry)
  19. 2278790Solanum tuberosum [TaxId:4113] [322091] (1 PDB entry)
  20. 2280001Escherichia coli [TaxId:83333] [323302] (2 PDB entries)
    1. Domain for 5g5g:
    2. Domain for 5g5h:
  21. 2286025Encephalitozoon cuniculi [TaxId:6035] [329326] (1 PDB entry)

More info for Protein automated matches from d.15.4.0: automated matches

Timeline for Protein automated matches from d.15.4.0: automated matches: