SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2008476Fold a.123: Nuclear receptor ligand-binding domain [48507] (1 superfamily)
    multihelical; 3 layers or orthogonally packed helices
  4. 2008477Superfamily a.123.1: Nuclear receptor ligand-binding domain [48508] (2 families) (S)
  5. 2009679Family a.123.1.0: automated matches [191623] (1 protein)
    not a true family
  6. 2009680Protein automated matches [191142] (6 species)
    not a true protein

Species:

  1. 2009681Crassostrea gigas [TaxId:29159] [226087] (2 PDB entries)
    1. Domains for 3ltx:
      1. 2009686Domain d3ltxa_: 3ltx A: [305866]
        automated match to d4n1yb_
      2. 2009687Domain d3ltxb_: 3ltx B: [305867]
        automated match to d4n1yb_
      3. 2009688Domain d3ltxc_: 3ltx C: [305868]
        automated match to d4n1yb_
      4. 2009689Domain d3ltxd_: 3ltx D: [305869]
        automated match to d4n1yb_
    2. Domains for 4n1y:
      1. 2009682Domain d4n1ya_: 4n1y A: [240559]
      2. 2009683Domain d4n1yb_: 4n1y B: [240560]
      3. 2009684Domain d4n1yc_: 4n1y C: [236808]
        automated match to d3ltxb_
      4. 2009685Domain d4n1yd_: 4n1y D: [236809]
        automated match to d3ltxb_
  2. 2009690Fruit fly (Drosophila melanogaster) [TaxId:7227] [189702] (2 PDB entries)
    1. Domain for 2iz2:
    2. Domain for 2xhs:
  3. 2009693Human (Homo sapiens) [TaxId:9606] [189274] (46 PDB entries)
    1. Domains for 3b0w:
      1. 2009699Domain d3b0wa_: 3b0w A: [199003]
        automated match to d3b0wb_
        complexed with dgx
      2. 2009700Domain d3b0wb_: 3b0w B: [193702]
        automated match to d3l0la_
        complexed with dgx
    2. Domain for 3cjw:
    3. Domain for 3l0j:
    4. Domains for 3l0l:
      1. 2009696Domain d3l0la_: 3l0l A: [179842]
        automated match to d1n83a_
        protein/DNA complex; complexed with hc3
      2. 2009697Domain d3l0lb_: 3l0l B: [179843]
        automated match to d1n83a_
        protein/DNA complex; complexed with hc3
    5. Domain for 3tx7:
    6. Domain for 4j5w:
    7. Domains for 4nb6:
      1. 2009725Domain d4nb6a_: 4nb6 A: [229950]
        automated match to d4nb6b_
        complexed with 444
      2. 2009726Domain d4nb6b_: 4nb6 B: [229343]
        automated match to d3l0la_
        complexed with 444
    8. Domains for 4qm0:
      1. 2009701Domain d4qm0a_: 4qm0 A: [259707]
        Other proteins in same PDB: d4qm0c2
        automated match to d3l0la_
        complexed with 39k, dms
      2. 2009702Domain d4qm0c1: 4qm0 C:265-507 [263764]
        Other proteins in same PDB: d4qm0c2
        automated match to d3l0la_
        complexed with 39k, dms
    9. Domain for 4udb:
    10. Domains for 4wqp:
      1. 2009703Domain d4wqpa_: 4wqp A: [269087]
        automated match to d1n83a_
        complexed with 3sx, so4
      2. 2009704Domain d4wqpb_: 4wqp B: [269088]
        automated match to d1n83a_
        complexed with 3sx, so4
    11. Domain for 4ymq:
    12. Domain for 4ypq:
    13. Domains for 4zjr:
      1. 2009727Domain d4zjra_: 4zjr A: [274101]
        Other proteins in same PDB: d4zjrc2, d4zjrd2
        automated match to d4nb6b_
        complexed with 4p3
      2. 2009728Domain d4zjrb_: 4zjr B: [274107]
        Other proteins in same PDB: d4zjrc2, d4zjrd2
        automated match to d4nb6b_
        complexed with 4p3
      3. 2009729Domain d4zjrc1: 4zjr C:265-483 [274103]
        Other proteins in same PDB: d4zjrc2, d4zjrd2
        automated match to d4nb6b_
        complexed with 4p3
      4. 2009730Domain d4zjrd1: 4zjr D:1-481 [274104]
        Other proteins in same PDB: d4zjrc2, d4zjrd2
        automated match to d4nb6b_
        complexed with 4p3
    14. Domains for 4zjw:
      1. 2009723Domain d4zjwa_: 4zjw A: [274099]
        automated match to d4nb6b_
        complexed with 4p1
      2. 2009724Domain d4zjwb_: 4zjw B: [274106]
        automated match to d4nb6b_
        complexed with 4p1
    15. Domains for 4zom:
      1. 2009716Domain d4zoma_: 4zom A: [274110]
        automated match to d4nb6b_
        complexed with 4q3
      2. 2009717Domain d4zomb_: 4zom B: [274109]
        automated match to d4nb6b_
        complexed with 4q3
      3. 2009718Domain d4zomc_: 4zom C: [274112]
        automated match to d4nb6b_
        complexed with 4q3
      4. 2009719Domain d4zomd_: 4zom D: [274111]
        automated match to d4nb6b_
        complexed with 4q3
    16. Domains for 5ak2:
      1. 2009712Domain d5ak2a1: 5ak2 A:307-552 [271607]
        Other proteins in same PDB: d5ak2a2
        automated match to d2pjla_
        complexed with 85z
      2. 2009713Domain d5ak2b_: 5ak2 B: [271608]
        Other proteins in same PDB: d5ak2a2
        automated match to d2pjla_
        complexed with 85z
    17. Domain for 5aph:
    18. Domain for 5apj:
    19. Domains for 5apk:
      1. 2009709Domain d5apka1: 5apk A:265-486 [310192]
        Other proteins in same PDB: d5apka2
        automated match to d1n83a_
        complexed with 76e
      2. 2009710Domain d5apkb_: 5apk B: [310194]
        Other proteins in same PDB: d5apka2
        automated match to d1n83a_
        complexed with 76e
    20. Domains for 5ayg:
      1. 2269239Domain d5aygb_: 5ayg B: [312545]
        automated match to d3l0la_
        protein/DNA complex; complexed with 4lq
      2. 2269284Domain d5ayga_: 5ayg A: [312590]
        automated match to d3l0la_
        protein/DNA complex; complexed with 4lq
    21. Domain for 5c4o:
    22. Domain for 5c4s:
    23. Domain for 5c4t:
    24. Domain for 5c4u:
    25. Domains for 5eth:
      1. 2273107Domain d5etha_: 5eth A: [316408]
        automated match to d4zoma_
        complexed with 5rt
      2. 2273347Domain d5ethb_: 5eth B: [316648]
        automated match to d4zoma_
        complexed with 5rt
    26. Domain for 5g42:
    27. Domain for 5g43:
    28. Domain for 5g44:
    29. Domain for 5g45:
    30. Domain for 5g46:
    31. Domains for 5ixk:
      1. 2275195Domain d5ixka_: 5ixk A: [318496]
        automated match to d4zoma_
        complexed with 6ew
      2. 2275204Domain d5ixkb_: 5ixk B: [318505]
        automated match to d4zoma_
        complexed with 6ew
    32. Domains for 5k38:
      1. 2291525Domain d5k38b_: 5k38 B: [334826]
        automated match to d3l0la_
      2. 2291562Domain d5k38a_: 5k38 A: [334863]
        automated match to d3l0la_
    33. Domains for 5k3l:
      1. 2291522Domain d5k3ld_: 5k3l D: [334823]
        automated match to d3l0la_
        complexed with 444
      2. 2291530Domain d5k3la_: 5k3l A: [334831]
        automated match to d3l0la_
        complexed with 444
      3. 2291549Domain d5k3lb_: 5k3l B: [334850]
        automated match to d3l0la_
        complexed with 444
      4. 2291630Domain d5k3lc_: 5k3l C: [334931]
        automated match to d3l0la_
        complexed with 444
    34. Domains for 5k3m:
      1. 2291523Domain d5k3ma_: 5k3m A: [334824]
        automated match to d3l0la_
        complexed with 6q5
      2. 2291528Domain d5k3mb_: 5k3m B: [334829]
        automated match to d3l0la_
        complexed with 6q5
    35. Domains for 5k3n:
      1. 2291524Domain d5k3nd_: 5k3n D: [334825]
        automated match to d3l0la_
        complexed with 6q6
      2. 2291670Domain d5k3na_: 5k3n A: [334971]
        automated match to d3l0la_
        complexed with 6q6
      3. 2291686Domain d5k3nc_: 5k3n C: [334987]
        automated match to d3l0la_
        complexed with 6q6
      4. 2291695Domain d5k3nb_: 5k3n B: [334996]
        automated match to d3l0la_
        complexed with 6q6
    36. Domains for 5k6e:
      1. 2291632Domain d5k6eb_: 5k6e B: [334933]
        automated match to d3l0la_
        complexed with 6qp
      2. 2291721Domain d5k6ea_: 5k6e A: [335022]
        automated match to d3l0la_
        complexed with 6qp
    37. Domains for 5k74:
      1. 2291533Domain d5k74b_: 5k74 B: [334834]
        automated match to d3l0la_
        complexed with 6qw
      2. 2291565Domain d5k74a_: 5k74 A: [334866]
        automated match to d3l0la_
        complexed with 6qw
    38. Domain for 5lwp:
    39. Domains for 5m96:
      1. 2283924Domain d5m96b_: 5m96 B: [327225]
        automated match to d4wqpa_
        complexed with q6y
      2. 2283935Domain d5m96a_: 5m96 A: [327236]
        automated match to d4wqpa_
        complexed with q6y
    40. Domain for 5ufo:
    41. Domains for 5ufr:
      1. 2289492Domain d5ufrb_: 5ufr B: [332793]
        automated match to d3l0la_
        complexed with 88j
      2. 2289500Domain d5ufra_: 5ufr A: [332801]
        automated match to d3l0la_
        complexed with 88j
    42. Domain for 5vb3:
    43. Domain for 5vb5:
    44. Domain for 5vb6:
    45. Domain for 5vb7:
    46. Domains for 5x8q:
      1. 2291966Domain d5x8qc_: 5x8q C: [335267]
        automated match to d3l0la_
        complexed with 82r; mutant
      2. 2291972Domain d5x8qa_: 5x8q A: [335273]
        automated match to d3l0la_
        complexed with 82r; mutant
      3. 2291983Domain d5x8qg_: 5x8q G: [335284]
        automated match to d3l0la_
        complexed with 82r; mutant
      4. 2292007Domain d5x8qe_: 5x8q E: [335308]
        automated match to d3l0la_
        complexed with 82r; mutant
  4. 2009731Mouse (Mus musculus) [TaxId:10090] [255824] (1 PDB entry)
  5. 2009733Tunicate (Polyandrocarpa misakiensis) [TaxId:7723] [225459] (1 PDB entry)
  6. 2291944Nomascus leucogenys [TaxId:61853] [335245] (4 PDB entries)
    1. Domains for 5x8s:
      1. 2291964Domain d5x8sb_: 5x8s B: [335265]
        automated match to d3l0la_
        complexed with 6q5; mutant
      2. 2291998Domain d5x8sa_: 5x8s A: [335299]
        automated match to d3l0la_
        complexed with 6q5; mutant
    2. Domain for 5x8u:
    3. Domain for 5x8w:
    4. Domains for 5x8x:
      1. 2291945Domain d5x8xa_: 5x8x A: [335246]
        automated match to d3l0la_
        complexed with 82o; mutant
      2. 2291958Domain d5x8xg_: 5x8x G: [335259]
        automated match to d3l0la_
        complexed with 82o; mutant
      3. 2291982Domain d5x8xc_: 5x8x C: [335283]
        automated match to d3l0la_
        complexed with 82o; mutant
      4. 2291990Domain d5x8xe_: 5x8x E: [335291]
        automated match to d3l0la_
        complexed with 82o; mutant

More info for Protein automated matches from a.123.1.0: automated matches

Timeline for Protein automated matches from a.123.1.0: automated matches: