Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2008476Fold a.123: Nuclear receptor ligand-binding domain [48507] (1 superfamily)
    multihelical; 3 layers or orthogonally packed helices
  4. 2008477Superfamily a.123.1: Nuclear receptor ligand-binding domain [48508] (2 families) (S)
  5. 2009679Family a.123.1.0: automated matches [191623] (1 protein)
    not a true family
  6. 2009680Protein automated matches [191142] (6 species)
    not a true protein

Species:

  1. 2009681Crassostrea gigas [TaxId:29159] [226087] (2 PDB entries)
    1. Domains for 3ltx:
      1. 2009686Domain d3ltxa_: 3ltx A: [305866]
        automated match to d4n1yb_
      2. 2009687Domain d3ltxb_: 3ltx B: [305867]
        automated match to d4n1yb_
      3. 2009688Domain d3ltxc_: 3ltx C: [305868]
        automated match to d4n1yb_
      4. 2009689Domain d3ltxd_: 3ltx D: [305869]
        automated match to d4n1yb_
    2. Domains for 4n1y:
      1. 2009682Domain d4n1ya_: 4n1y A: [240559]
      2. 2009683Domain d4n1yb_: 4n1y B: [240560]
      3. 2009684Domain d4n1yc_: 4n1y C: [236808]
        automated match to d3ltxb_
      4. 2009685Domain d4n1yd_: 4n1y D: [236809]
        automated match to d3ltxb_
  2. 2009690Fruit fly (Drosophila melanogaster) [TaxId:7227] [189702] (2 PDB entries)
    1. Domain for 2iz2:
    2. Domain for 2xhs:
  3. 2009693Human (Homo sapiens) [TaxId:9606] [189274] (53 PDB entries)
    1. Domains for 3b0w:
      1. 2009699Domain d3b0wa_: 3b0w A: [199003]
        automated match to d3b0wb_
        complexed with dgx
      2. 2009700Domain d3b0wb_: 3b0w B: [193702]
        automated match to d3l0la_
        complexed with dgx
    2. Domain for 3cjw:
    3. Domain for 3l0j:
    4. Domains for 3l0l:
      1. 2009696Domain d3l0la_: 3l0l A: [179842]
        automated match to d1n83a_
        protein/DNA complex; complexed with hc3
      2. 2009697Domain d3l0lb_: 3l0l B: [179843]
        automated match to d1n83a_
        protein/DNA complex; complexed with hc3
    5. Domain for 3tx7:
    6. Domain for 4j5w:
    7. Domains for 4nb6:
      1. 2009725Domain d4nb6a_: 4nb6 A: [229950]
        automated match to d4nb6b_
        complexed with 444
      2. 2009726Domain d4nb6b_: 4nb6 B: [229343]
        automated match to d3l0la_
        complexed with 444
    8. Domains for 4qm0:
      1. 2009701Domain d4qm0a_: 4qm0 A: [259707]
        Other proteins in same PDB: d4qm0c2
        automated match to d3l0la_
        complexed with 39k, dms
      2. 2009702Domain d4qm0c1: 4qm0 C:265-507 [263764]
        Other proteins in same PDB: d4qm0c2
        automated match to d3l0la_
        complexed with 39k, dms
    9. Domain for 4udb:
    10. Domains for 4wqp:
      1. 2009703Domain d4wqpa_: 4wqp A: [269087]
        automated match to d1n83a_
        complexed with 3sx, so4
      2. 2009704Domain d4wqpb_: 4wqp B: [269088]
        automated match to d1n83a_
        complexed with 3sx, so4
    11. Domain for 4ymq:
    12. Domain for 4ypq:
    13. Domains for 4zjr:
      1. 2009727Domain d4zjra_: 4zjr A: [274101]
        Other proteins in same PDB: d4zjrc2, d4zjrd2
        automated match to d4nb6b_
        complexed with 4p3
      2. 2009728Domain d4zjrb_: 4zjr B: [274107]
        Other proteins in same PDB: d4zjrc2, d4zjrd2
        automated match to d4nb6b_
        complexed with 4p3
      3. 2009729Domain d4zjrc1: 4zjr C:265-483 [274103]
        Other proteins in same PDB: d4zjrc2, d4zjrd2
        automated match to d4nb6b_
        complexed with 4p3
      4. 2009730Domain d4zjrd1: 4zjr D:1-481 [274104]
        Other proteins in same PDB: d4zjrc2, d4zjrd2
        automated match to d4nb6b_
        complexed with 4p3
    14. Domains for 4zjw:
      1. 2009723Domain d4zjwa_: 4zjw A: [274099]
        automated match to d4nb6b_
        complexed with 4p1
      2. 2009724Domain d4zjwb_: 4zjw B: [274106]
        automated match to d4nb6b_
        complexed with 4p1
    15. Domains for 4zom:
      1. 2009716Domain d4zoma_: 4zom A: [274110]
        automated match to d4nb6b_
        complexed with 4q3
      2. 2009717Domain d4zomb_: 4zom B: [274109]
        automated match to d4nb6b_
        complexed with 4q3
      3. 2009718Domain d4zomc_: 4zom C: [274112]
        automated match to d4nb6b_
        complexed with 4q3
      4. 2009719Domain d4zomd_: 4zom D: [274111]
        automated match to d4nb6b_
        complexed with 4q3
    16. Domains for 5ak2:
      1. 2009712Domain d5ak2a1: 5ak2 A:307-552 [271607]
        Other proteins in same PDB: d5ak2a2
        automated match to d2pjla_
        complexed with 85z
      2. 2009713Domain d5ak2b_: 5ak2 B: [271608]
        Other proteins in same PDB: d5ak2a2
        automated match to d2pjla_
        complexed with 85z
    17. Domain for 5aph:
    18. Domain for 5apj:
    19. Domains for 5apk:
      1. 2009709Domain d5apka1: 5apk A:265-486 [310192]
        Other proteins in same PDB: d5apka2
        automated match to d1n83a_
        complexed with 76e
      2. 2009710Domain d5apkb_: 5apk B: [310194]
        Other proteins in same PDB: d5apka2
        automated match to d1n83a_
        complexed with 76e
    20. Domains for 5ayg:
      1. 2269239Domain d5aygb_: 5ayg B: [312545]
        automated match to d3l0la_
        protein/DNA complex; complexed with 4lq
      2. 2269284Domain d5ayga_: 5ayg A: [312590]
        automated match to d3l0la_
        protein/DNA complex; complexed with 4lq
    21. Domain for 5c4o:
    22. Domain for 5c4s:
    23. Domain for 5c4t:
    24. Domain for 5c4u:
    25. Domains for 5eth:
      1. 2273107Domain d5etha_: 5eth A: [316408]
        automated match to d4zoma_
        complexed with 5rt
      2. 2273347Domain d5ethb_: 5eth B: [316648]
        automated match to d4zoma_
        complexed with 5rt
    26. Domain for 5g42:
    27. Domain for 5g43:
    28. Domain for 5g44:
    29. Domain for 5g45:
    30. Domain for 5g46:
    31. Domains for 5ixk:
      1. 2275195Domain d5ixka_: 5ixk A: [318496]
        automated match to d4zoma_
        complexed with 6ew
      2. 2275204Domain d5ixkb_: 5ixk B: [318505]
        automated match to d4zoma_
        complexed with 6ew
    32. Domains for 5k38:
      1. 2291525Domain d5k38b_: 5k38 B: [334826]
        automated match to d3l0la_
      2. 2291562Domain d5k38a_: 5k38 A: [334863]
        automated match to d3l0la_
    33. Domains for 5k3l:
      1. 2291522Domain d5k3ld_: 5k3l D: [334823]
        automated match to d3l0la_
        complexed with 444
      2. 2291530Domain d5k3la_: 5k3l A: [334831]
        automated match to d3l0la_
        complexed with 444
      3. 2291549Domain d5k3lb_: 5k3l B: [334850]
        automated match to d3l0la_
        complexed with 444
      4. 2291630Domain d5k3lc_: 5k3l C: [334931]
        automated match to d3l0la_
        complexed with 444
    34. Domains for 5k3m:
      1. 2291523Domain d5k3ma_: 5k3m A: [334824]
        automated match to d3l0la_
        complexed with 6q5
      2. 2291528Domain d5k3mb_: 5k3m B: [334829]
        automated match to d3l0la_
        complexed with 6q5
    35. Domains for 5k3n:
      1. 2291524Domain d5k3nd_: 5k3n D: [334825]
        automated match to d3l0la_
        complexed with 6q6
      2. 2291670Domain d5k3na_: 5k3n A: [334971]
        automated match to d3l0la_
        complexed with 6q6
      3. 2291686Domain d5k3nc_: 5k3n C: [334987]
        automated match to d3l0la_
        complexed with 6q6
      4. 2291695Domain d5k3nb_: 5k3n B: [334996]
        automated match to d3l0la_
        complexed with 6q6
    36. Domains for 5k6e:
      1. 2291632Domain d5k6eb_: 5k6e B: [334933]
        automated match to d3l0la_
        complexed with 6qp
      2. 2291721Domain d5k6ea_: 5k6e A: [335022]
        automated match to d3l0la_
        complexed with 6qp
    37. Domains for 5k74:
      1. 2291533Domain d5k74b_: 5k74 B: [334834]
        automated match to d3l0la_
        complexed with 6qw
      2. 2291565Domain d5k74a_: 5k74 A: [334866]
        automated match to d3l0la_
        complexed with 6qw
    38. Domain for 5lwp:
    39. Domains for 5m96:
      1. 2283924Domain d5m96b_: 5m96 B: [327225]
        automated match to d4wqpa_
        complexed with q6y
      2. 2283935Domain d5m96a_: 5m96 A: [327236]
        automated match to d4wqpa_
        complexed with q6y
    40. Domains for 5nti:
      1. 2292375Domain d5ntib_: 5nti B: [335676]
        automated match to d3l0la_
        complexed with c3s
      2. 2292395Domain d5ntid_: 5nti D: [335696]
        automated match to d3l0la_
        complexed with c3s
      3. 2292410Domain d5ntia_: 5nti A: [335711]
        automated match to d3l0la_
        complexed with c3s
      4. 2292456Domain d5ntic_: 5nti C: [335757]
        automated match to d3l0la_
        complexed with c3s
    41. Domains for 5ntk:
      1. 2292458Domain d5ntka_: 5ntk A: [335759]
        automated match to d4wqpa_
        complexed with 99n
      2. 2292540Domain d5ntkb_: 5ntk B: [335841]
        automated match to d4wqpa_
        complexed with 99n
    42. Domains for 5ntn:
      1. 2292417Domain d5ntnb_: 5ntn B: [335718]
        automated match to d3l0la_
        complexed with 98h
      2. 2292436Domain d5ntna_: 5ntn A: [335737]
        automated match to d3l0la_
        complexed with 98h
      3. 2292445Domain d5ntnd_: 5ntn D: [335746]
        automated match to d3l0la_
        complexed with 98h
      4. 2292545Domain d5ntnc_: 5ntn C: [335846]
        automated match to d3l0la_
        complexed with 98h
    43. Domain for 5ntp:
    44. Domains for 5ntq:
      1. 2292415Domain d5ntqa_: 5ntq A: [335716]
        automated match to d3l0la_
        complexed with 444
      2. 2292495Domain d5ntqb_: 5ntq B: [335796]
        automated match to d3l0la_
        complexed with 444
    45. Domains for 5ntw:
      1. 2292386Domain d5ntwa_: 5ntw A: [335687]
        automated match to d3l0la_
        complexed with 98n
      2. 2292391Domain d5ntwb_: 5ntw B: [335692]
        automated match to d3l0la_
        complexed with 98n
      3. 2292402Domain d5ntwc_: 5ntw C: [335703]
        automated match to d3l0la_
        complexed with 98n
      4. 2292425Domain d5ntwd_: 5ntw D: [335726]
        automated match to d3l0la_
        complexed with 98n
    46. Domains for 5nu1:
      1. 2292442Domain d5nu1b_: 5nu1 B: [335743]
        automated match to d3l0la_
        complexed with 8yb
      2. 2292474Domain d5nu1a_: 5nu1 A: [335775]
        automated match to d3l0la_
        complexed with 8yb
    47. Domain for 5ufo:
    48. Domains for 5ufr:
      1. 2289492Domain d5ufrb_: 5ufr B: [332793]
        automated match to d3l0la_
        complexed with 88j
      2. 2289500Domain d5ufra_: 5ufr A: [332801]
        automated match to d3l0la_
        complexed with 88j
    49. Domain for 5vb3:
    50. Domain for 5vb5:
    51. Domain for 5vb6:
    52. Domain for 5vb7:
    53. Domains for 5x8q:
      1. 2291966Domain d5x8qc_: 5x8q C: [335267]
        automated match to d3l0la_
        complexed with 82r; mutant
      2. 2291972Domain d5x8qa_: 5x8q A: [335273]
        automated match to d3l0la_
        complexed with 82r; mutant
      3. 2291983Domain d5x8qg_: 5x8q G: [335284]
        automated match to d3l0la_
        complexed with 82r; mutant
      4. 2292007Domain d5x8qe_: 5x8q E: [335308]
        automated match to d3l0la_
        complexed with 82r; mutant
  4. 2009731Mouse (Mus musculus) [TaxId:10090] [255824] (1 PDB entry)
  5. 2009733Tunicate (Polyandrocarpa misakiensis) [TaxId:7723] [225459] (1 PDB entry)
  6. 2291944Nomascus leucogenys [TaxId:61853] [335245] (4 PDB entries)
    1. Domains for 5x8s:
      1. 2291964Domain d5x8sb_: 5x8s B: [335265]
        automated match to d3l0la_
        complexed with 6q5; mutant
      2. 2291998Domain d5x8sa_: 5x8s A: [335299]
        automated match to d3l0la_
        complexed with 6q5; mutant
    2. Domain for 5x8u:
    3. Domain for 5x8w:
    4. Domains for 5x8x:
      1. 2291945Domain d5x8xa_: 5x8x A: [335246]
        automated match to d3l0la_
        complexed with 82o; mutant
      2. 2291958Domain d5x8xg_: 5x8x G: [335259]
        automated match to d3l0la_
        complexed with 82o; mutant
      3. 2291982Domain d5x8xc_: 5x8x C: [335283]
        automated match to d3l0la_
        complexed with 82o; mutant
      4. 2291990Domain d5x8xe_: 5x8x E: [335291]
        automated match to d3l0la_
        complexed with 82o; mutant

More info for Protein automated matches from a.123.1.0: automated matches

Timeline for Protein automated matches from a.123.1.0: automated matches: