Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2045654Fold b.34: SH3-like barrel [50036] (21 superfamilies)
    barrel, partly opened; n*=4, S*=8; meander
    the last strand is interrupted by a turn of 3-10 helix
  4. 2047511Superfamily b.34.13: Chromo domain-like [54160] (4 families) (S)
    SH3-like barrel is capped by a C-terminal helix
  5. 2047686Family b.34.13.0: automated matches [191621] (1 protein)
    not a true family
  6. 2047687Protein automated matches [191139] (4 species)
    not a true protein

Species:

  1. 2047688Entamoeba (Entamoeba histolytica) [TaxId:5759] [256407] (1 PDB entry)
  2. 2047690Fruit fly (Drosophila melanogaster) [TaxId:7227] [189399] (4 PDB entries)
    1. Domain for 2lrq:
    2. Domains for 3m9q:
      1. 2047691Domain d3m9qa_: 3m9q A: [180976]
        automated match to d2efia1
        protein/DNA complex
      2. 2047692Domain d3m9qb_: 3m9q B: [180977]
        automated match to d2efia1
        protein/DNA complex
    3. Domains for 3p7j:
      1. 2047694Domain d3p7ja_: 3p7j A: [248428]
        automated match to d2fmma_
        complexed with gol
      2. 2047695Domain d3p7jb_: 3p7j B: [248429]
        automated match to d2fmma_
        complexed with gol
    4. Domain for 4quc:
  3. 2047697Human (Homo sapiens) [TaxId:9606] [189257] (7 PDB entries)
    1. Domain for 2k1b:
    2. Domains for 3lwe:
      1. 2047702Domain d3lwea_: 3lwe A: [180604]
        automated match to d2dnta1
      2. 2047703Domain d3lweb_: 3lwe B: [180605]
        automated match to d2dnta1
    3. Domains for 3mts:
      1. 2047705Domain d3mtsa1: 3mts A:44-104 [232954]
        Other proteins in same PDB: d3mtsa2, d3mtsb2, d3mtsc2
        automated match to d3f2ua_
      2. 2047706Domain d3mtsb1: 3mts B:44-103 [232956]
        Other proteins in same PDB: d3mtsa2, d3mtsb2, d3mtsc2
        automated match to d3f2ua_
      3. 2047707Domain d3mtsc1: 3mts C:44-100 [232955]
        Other proteins in same PDB: d3mtsa2, d3mtsb2, d3mtsc2
        automated match to d3f2ua_
    4. Domains for 3ob9:
      1. 2047712Domain d3ob9a_: 3ob9 A: [182909]
        Other proteins in same PDB: d3ob9d2
        automated match to d2efia1
        complexed with nhe, so4
      2. 2047713Domain d3ob9b_: 3ob9 B: [182910]
        Other proteins in same PDB: d3ob9d2
        automated match to d2efia1
        complexed with nhe, so4
      3. 2047714Domain d3ob9c_: 3ob9 C: [182911]
        Other proteins in same PDB: d3ob9d2
        automated match to d2efia1
        complexed with nhe, so4
      4. 2047715Domain d3ob9d1: 3ob9 D:2-92 [182912]
        Other proteins in same PDB: d3ob9d2
        automated match to d2efia1
        complexed with nhe, so4
      5. 2047716Domain d3ob9e_: 3ob9 E: [182913]
        Other proteins in same PDB: d3ob9d2
        automated match to d2efia1
        complexed with nhe, so4
    5. Domains for 3qo2:
      1. 2047708Domain d3qo2a1: 3qo2 A:55-114 [184543]
        Other proteins in same PDB: d3qo2a2
        automated match to d2dnta1
        protein/DNA complex; complexed with edo
      2. 2047709Domain d3qo2b_: 3qo2 B: [184544]
        Other proteins in same PDB: d3qo2a2
        automated match to d2dnta1
        protein/DNA complex; complexed with edo
      3. 2047710Domain d3qo2c_: 3qo2 C: [184545]
        Other proteins in same PDB: d3qo2a2
        automated match to d2dnta1
        protein/DNA complex; complexed with edo
      4. 2047711Domain d3qo2d_: 3qo2 D: [184546]
        Other proteins in same PDB: d3qo2a2
        automated match to d2dnta1
        protein/DNA complex; complexed with edo
    6. Domains for 3r93:
      1. 2047698Domain d3r93a_: 3r93 A: [184851]
        automated match to d2dnta1
        complexed with unx
      2. 2047699Domain d3r93b_: 3r93 B: [184852]
        automated match to d2dnta1
        complexed with unx
      3. 2047700Domain d3r93c_: 3r93 C: [184853]
        automated match to d2dnta1
        complexed with unx
      4. 2047701Domain d3r93d_: 3r93 D: [184854]
        automated match to d2dnta1
        complexed with unx
    7. Domain for 3svm:
  4. 2287238Oryza sativa [TaxId:4530] [330539] (1 PDB entry)

More info for Protein automated matches from b.34.13.0: automated matches

Timeline for Protein automated matches from b.34.13.0: automated matches: