SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2045654Fold b.34: SH3-like barrel [50036] (21 superfamilies)
    barrel, partly opened; n*=4, S*=8; meander
    the last strand is interrupted by a turn of 3-10 helix
  4. 2047511Superfamily b.34.13: Chromo domain-like [54160] (4 families) (S)
    SH3-like barrel is capped by a C-terminal helix
  5. 2047686Family b.34.13.0: automated matches [191621] (1 protein)
    not a true family
  6. 2047687Protein automated matches [191139] (4 species)
    not a true protein

Species:

  1. 2047688Entamoeba (Entamoeba histolytica) [TaxId:5759] [256407] (1 PDB entry)
  2. 2047690Fruit fly (Drosophila melanogaster) [TaxId:7227] [189399] (4 PDB entries)
    1. Domain for 2lrq:
    2. Domains for 3m9q:
      1. 2047691Domain d3m9qa_: 3m9q A: [180976]
        automated match to d2efia1
        protein/DNA complex
      2. 2047692Domain d3m9qb_: 3m9q B: [180977]
        automated match to d2efia1
        protein/DNA complex
    3. Domains for 3p7j:
      1. 2047694Domain d3p7ja_: 3p7j A: [248428]
        automated match to d2fmma_
        complexed with gol
      2. 2047695Domain d3p7jb_: 3p7j B: [248429]
        automated match to d2fmma_
        complexed with gol
    4. Domain for 4quc:
  3. 2047697Human (Homo sapiens) [TaxId:9606] [189257] (7 PDB entries)
    1. Domain for 2k1b:
    2. Domains for 3lwe:
      1. 2047702Domain d3lwea_: 3lwe A: [180604]
        automated match to d2dnta1
      2. 2047703Domain d3lweb_: 3lwe B: [180605]
        automated match to d2dnta1
    3. Domains for 3mts:
      1. 2047705Domain d3mtsa1: 3mts A:44-104 [232954]
        Other proteins in same PDB: d3mtsa2, d3mtsb2, d3mtsc2
        automated match to d3f2ua_
      2. 2047706Domain d3mtsb1: 3mts B:44-103 [232956]
        Other proteins in same PDB: d3mtsa2, d3mtsb2, d3mtsc2
        automated match to d3f2ua_
      3. 2047707Domain d3mtsc1: 3mts C:44-100 [232955]
        Other proteins in same PDB: d3mtsa2, d3mtsb2, d3mtsc2
        automated match to d3f2ua_
    4. Domains for 3ob9:
      1. 2047712Domain d3ob9a_: 3ob9 A: [182909]
        Other proteins in same PDB: d3ob9d2
        automated match to d2efia1
        complexed with nhe, so4
      2. 2047713Domain d3ob9b_: 3ob9 B: [182910]
        Other proteins in same PDB: d3ob9d2
        automated match to d2efia1
        complexed with nhe, so4
      3. 2047714Domain d3ob9c_: 3ob9 C: [182911]
        Other proteins in same PDB: d3ob9d2
        automated match to d2efia1
        complexed with nhe, so4
      4. 2047715Domain d3ob9d1: 3ob9 D:2-92 [182912]
        Other proteins in same PDB: d3ob9d2
        automated match to d2efia1
        complexed with nhe, so4
      5. 2047716Domain d3ob9e_: 3ob9 E: [182913]
        Other proteins in same PDB: d3ob9d2
        automated match to d2efia1
        complexed with nhe, so4
    5. Domains for 3qo2:
      1. 2047708Domain d3qo2a1: 3qo2 A:55-114 [184543]
        Other proteins in same PDB: d3qo2a2
        automated match to d2dnta1
        protein/DNA complex; complexed with edo
      2. 2047709Domain d3qo2b_: 3qo2 B: [184544]
        Other proteins in same PDB: d3qo2a2
        automated match to d2dnta1
        protein/DNA complex; complexed with edo
      3. 2047710Domain d3qo2c_: 3qo2 C: [184545]
        Other proteins in same PDB: d3qo2a2
        automated match to d2dnta1
        protein/DNA complex; complexed with edo
      4. 2047711Domain d3qo2d_: 3qo2 D: [184546]
        Other proteins in same PDB: d3qo2a2
        automated match to d2dnta1
        protein/DNA complex; complexed with edo
    6. Domains for 3r93:
      1. 2047698Domain d3r93a_: 3r93 A: [184851]
        automated match to d2dnta1
        complexed with unx
      2. 2047699Domain d3r93b_: 3r93 B: [184852]
        automated match to d2dnta1
        complexed with unx
      3. 2047700Domain d3r93c_: 3r93 C: [184853]
        automated match to d2dnta1
        complexed with unx
      4. 2047701Domain d3r93d_: 3r93 D: [184854]
        automated match to d2dnta1
        complexed with unx
    7. Domain for 3svm:
  4. 2287238Oryza sativa [TaxId:4530] [330539] (1 PDB entry)

More info for Protein automated matches from b.34.13.0: automated matches

Timeline for Protein automated matches from b.34.13.0: automated matches: