SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2006336Fold a.118: alpha-alpha superhelix [48370] (25 superfamilies)
    multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix
  4. 2007623Superfamily a.118.9: ENTH/VHS domain [48464] (5 families) (S)
  5. 2007726Family a.118.9.0: automated matches [191620] (1 protein)
    not a true family
  6. 2007727Protein automated matches [191137] (5 species)
    not a true protein

Species:

  1. 2007728Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [311220] (1 PDB entry)
  2. 2007730Human (Homo sapiens) [TaxId:9606] [189251] (7 PDB entries)
    1. Domain for 1x5b:
    2. Domain for 2l0t:
    3. Domains for 3ldz:
      1. 2007738Domain d3ldza_: 3ldz A: [180200]
        Other proteins in same PDB: d3ldze_, d3ldzf_, d3ldzg_
        automated match to d1elka_
      2. 2007739Domain d3ldzb_: 3ldz B: [180201]
        Other proteins in same PDB: d3ldze_, d3ldzf_, d3ldzg_
        automated match to d1elka_
      3. 2007740Domain d3ldzc_: 3ldz C: [180202]
        Other proteins in same PDB: d3ldze_, d3ldzf_, d3ldzg_
        automated match to d1elka_
      4. 2007741Domain d3ldzd_: 3ldz D: [180203]
        Other proteins in same PDB: d3ldze_, d3ldzf_, d3ldzg_
        automated match to d1elka_
    4. Domains for 3rru:
      1. 2007734Domain d3rrua_: 3rru A: [249201]
        automated match to d1elka_
      2. 2007735Domain d3rrub_: 3rru B: [249202]
        automated match to d1elka_
    5. Domain for 3zyq:
    6. Domain for 4avx:
    7. Domain for 4flb:
  3. 2007742Norway rat (Rattus norvegicus) [TaxId:10116] [226790] (2 PDB entries)
    1. Domains for 3zyk:
      1. 2007745Domain d3zyka1: 3zyk A:20-148 [218583]
        Other proteins in same PDB: d3zyka2, d3zykb2
        automated match to d1hx8a2
      2. 2007746Domain d3zykb1: 3zyk B:18-148 [218585]
        Other proteins in same PDB: d3zyka2, d3zykb2
        automated match to d1hx8a2
    2. Domains for 3zyl:
      1. 2007743Domain d3zyla1: 3zyl A:5-148 [218587]
        Other proteins in same PDB: d3zyla2, d3zylb2
        automated match to d1hx8a2
      2. 2007744Domain d3zylb1: 3zyl B:18-148 [218589]
        Other proteins in same PDB: d3zyla2, d3zylb2
        automated match to d1hx8a2
  4. 2280409Saccharomyces cerevisiae [TaxId:559292] [323710] (1 PDB entry)
  5. 2285435Candida albicans [TaxId:237561] [328736] (1 PDB entry)

More info for Protein automated matches from a.118.9.0: automated matches

Timeline for Protein automated matches from a.118.9.0: automated matches: