Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2089713Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2169412Fold c.124: NagB/RpiA/CoA transferase-like [100949] (1 superfamily)
    core: 3 layers: a/b/a; parallel or mixed beta-sheet of 6 strands, order 321456
  4. 2169413Superfamily c.124.1: NagB/RpiA/CoA transferase-like [100950] (9 families) (S)
  5. 2169699Family c.124.1.0: automated matches [191609] (1 protein)
    not a true family
  6. 2169700Protein automated matches [191112] (14 species)
    not a true protein

Species:

  1. 2169701Acetobacter aceti [TaxId:1457393] [316891] (2 PDB entries)
    1. Domains for 5dw4:
      1. 2169702Domain d5dw4a1: 5dw4 A:3-229 [316894]
        Other proteins in same PDB: d5dw4a3
        automated match to d4eu3a1
        complexed with act, imd
      2. 2169703Domain d5dw4b1: 5dw4 B:2-229 [316892]
        Other proteins in same PDB: d5dw4a3
        automated match to d4eu3a1
        complexed with act, imd
    2. Domain for 5dw5:
  2. 2169705Acetobacter aceti [TaxId:435] [226493] (17 PDB entries)
    1. Domains for 4eu3:
      1. 2169710Domain d4eu3a1: 4eu3 A:2-229 [220808]
        Other proteins in same PDB: d4eu3a3
        automated match to d2g39a1
        complexed with cit, cl
      2. 2169711Domain d4eu3a2: 4eu3 A:230-505 [220809]
        Other proteins in same PDB: d4eu3a3
        automated match to d2g39a2
        complexed with cit, cl
      3. 2169712Domain d4eu3b1: 4eu3 B:2-229 [220810]
        Other proteins in same PDB: d4eu3a3
        automated match to d2g39a1
        complexed with cit, cl
      4. 2169713Domain d4eu3b2: 4eu3 B:230-505 [220811]
        Other proteins in same PDB: d4eu3a3
        automated match to d2g39a2
        complexed with cit, cl
    2. Domains for 4eu4:
      1. 2169763Domain d4eu4a1: 4eu4 A:2-229 [220812]
        automated match to d2g39a1
        complexed with cl, coa, so4
      2. 2169764Domain d4eu4a2: 4eu4 A:230-505 [220813]
        automated match to d2g39a2
        complexed with cl, coa, so4
      3. 2169765Domain d4eu4b1: 4eu4 B:2-229 [220814]
        automated match to d2g39a1
        complexed with cl, coa, so4
      4. 2169766Domain d4eu4b2: 4eu4 B:230-505 [220815]
        automated match to d2g39a2
        complexed with cl, coa, so4
    3. Domains for 4eu5:
      1. 2169718Domain d4eu5a1: 4eu5 A:2-229 [220816]
        Other proteins in same PDB: d4eu5a3
        automated match to d2g39a1
        complexed with cl, coa
      2. 2169719Domain d4eu5a2: 4eu5 A:230-505 [220817]
        Other proteins in same PDB: d4eu5a3
        automated match to d2g39a2
        complexed with cl, coa
      3. 2169720Domain d4eu5b1: 4eu5 B:2-229 [220818]
        Other proteins in same PDB: d4eu5a3
        automated match to d2g39a1
        complexed with cl, coa
      4. 2169721Domain d4eu5b2: 4eu5 B:230-505 [220819]
        Other proteins in same PDB: d4eu5a3
        automated match to d2g39a2
        complexed with cl, coa
    4. Domains for 4eu6:
      1. 2169734Domain d4eu6a1: 4eu6 A:2-229 [220820]
        Other proteins in same PDB: d4eu6a3
        automated match to d2g39a1
        complexed with act, cl, coa
      2. 2169735Domain d4eu6a2: 4eu6 A:230-505 [220821]
        Other proteins in same PDB: d4eu6a3
        automated match to d2g39a2
        complexed with act, cl, coa
      3. 2169736Domain d4eu6b1: 4eu6 B:2-229 [220822]
        Other proteins in same PDB: d4eu6a3
        automated match to d2g39a1
        complexed with act, cl, coa
      4. 2169737Domain d4eu6b2: 4eu6 B:230-505 [220823]
        Other proteins in same PDB: d4eu6a3
        automated match to d2g39a2
        complexed with act, cl, coa
    5. Domains for 4eu7:
      1. 2169714Domain d4eu7a1: 4eu7 A:2-229 [220824]
        Other proteins in same PDB: d4eu7a3
        automated match to d2g39a1
        complexed with cit, cl, coa
      2. 2169715Domain d4eu7a2: 4eu7 A:230-505 [220825]
        Other proteins in same PDB: d4eu7a3
        automated match to d2g39a2
        complexed with cit, cl, coa
      3. 2169716Domain d4eu7b1: 4eu7 B:2-229 [220826]
        Other proteins in same PDB: d4eu7a3
        automated match to d2g39a1
        complexed with cit, cl, coa
      4. 2169717Domain d4eu7b2: 4eu7 B:230-505 [220827]
        Other proteins in same PDB: d4eu7a3
        automated match to d2g39a2
        complexed with cit, cl, coa
    6. Domains for 4eu8:
      1. 2169722Domain d4eu8a1: 4eu8 A:2-229 [220828]
        automated match to d2g39a1
        complexed with cl, coa
      2. 2169723Domain d4eu8a2: 4eu8 A:230-505 [220829]
        automated match to d2g39a2
        complexed with cl, coa
      3. 2169724Domain d4eu8b1: 4eu8 B:2-229 [220830]
        automated match to d2g39a1
        complexed with cl, coa
      4. 2169725Domain d4eu8b2: 4eu8 B:230-505 [220831]
        automated match to d2g39a2
        complexed with cl, coa
    7. Domains for 4eu9:
      1. 2169706Domain d4eu9a1: 4eu9 A:2-230 [220832]
        Other proteins in same PDB: d4eu9a3
        automated match to d2g39a1
        complexed with cl, coa
      2. 2169707Domain d4eu9a2: 4eu9 A:231-505 [220833]
        Other proteins in same PDB: d4eu9a3
        automated match to d2g39a2
        complexed with cl, coa
      3. 2169708Domain d4eu9b1: 4eu9 B:2-230 [220834]
        Other proteins in same PDB: d4eu9a3
        automated match to d2g39a1
        complexed with cl, coa
      4. 2169709Domain d4eu9b2: 4eu9 B:231-505 [220835]
        Other proteins in same PDB: d4eu9a3
        automated match to d2g39a2
        complexed with cl, coa
    8. Domains for 4eua:
      1. 2169751Domain d4euaa1: 4eua A:2-230 [220836]
        Other proteins in same PDB: d4euaa3
        automated match to d2g39a1
        complexed with cl, coa
      2. 2169752Domain d4euaa2: 4eua A:231-505 [220837]
        Other proteins in same PDB: d4euaa3
        automated match to d2g39a2
        complexed with cl, coa
      3. 2169753Domain d4euab1: 4eua B:2-230 [220838]
        Other proteins in same PDB: d4euaa3
        automated match to d2g39a1
        complexed with cl, coa
      4. 2169754Domain d4euab2: 4eua B:231-505 [220839]
        Other proteins in same PDB: d4euaa3
        automated match to d2g39a2
        complexed with cl, coa
    9. Domains for 4eub:
      1. 2169730Domain d4euba1: 4eub A:2-229 [220840]
        automated match to d2g39a1
        complexed with cl, coa
      2. 2169731Domain d4euba2: 4eub A:230-505 [220841]
        automated match to d2g39a2
        complexed with cl, coa
      3. 2169732Domain d4eubb1: 4eub B:2-229 [220842]
        automated match to d2g39a1
        complexed with cl, coa
      4. 2169733Domain d4eubb2: 4eub B:230-505 [220843]
        automated match to d2g39a2
        complexed with cl, coa
    10. Domains for 4euc:
      1. 2169755Domain d4euca1: 4euc A:2-229 [220844]
        automated match to d2g39a1
        complexed with 0rq, cl
      2. 2169756Domain d4euca2: 4euc A:230-505 [220845]
        automated match to d2g39a2
        complexed with 0rq, cl
      3. 2169757Domain d4eucb1: 4euc B:2-229 [220846]
        automated match to d2g39a1
        complexed with 0rq, cl
      4. 2169758Domain d4eucb2: 4euc B:230-505 [220847]
        automated match to d2g39a2
        complexed with 0rq, cl
    11. Domains for 4eud:
      1. 2169726Domain d4euda1: 4eud A:2-229 [220848]
        automated match to d2g39a1
        complexed with cit, cl, coa
      2. 2169727Domain d4euda2: 4eud A:230-505 [220849]
        automated match to d2g39a2
        complexed with cit, cl, coa
      3. 2169728Domain d4eudb1: 4eud B:2-229 [220850]
        automated match to d2g39a1
        complexed with cit, cl, coa
      4. 2169729Domain d4eudb2: 4eud B:230-505 [220851]
        automated match to d2g39a2
        complexed with cit, cl, coa
    12. Domains for 4fac:
      1. 2169738Domain d4faca1: 4fac A:2-229 [221094]
        automated match to d2g39a1
        complexed with 0t1, ace, act, cl
      2. 2169739Domain d4faca2: 4fac A:230-505 [221095]
        automated match to d2g39a2
        complexed with 0t1, ace, act, cl
      3. 2169740Domain d4facb1: 4fac B:2-229 [221096]
        automated match to d2g39a1
        complexed with 0t1, ace, act, cl
      4. 2169741Domain d4facb2: 4fac B:230-505 [221097]
        automated match to d2g39a2
        complexed with 0t1, ace, act, cl
    13. Domains for 5ddk:
      1. 2169767Domain d5ddka1: 5ddk A:2-229 [316919]
        Other proteins in same PDB: d5ddka3
        automated match to d4eu3a1
        complexed with cl, coa, imd
      2. 2169768Domain d5ddka2: 5ddk A:230-505 [316920]
        Other proteins in same PDB: d5ddka3
        automated match to d4eu3a2
        complexed with cl, coa, imd
      3. 2169769Domain d5ddkb1: 5ddk B:2-229 [316912]
        Other proteins in same PDB: d5ddka3
        automated match to d4eu3a1
        complexed with cl, coa, imd
      4. 2169770Domain d5ddkb2: 5ddk B:230-505 [316913]
        Other proteins in same PDB: d5ddka3
        automated match to d4eu3a2
        complexed with cl, coa, imd
    14. Domains for 5dw4:
      1. 2169746Domain d5dw4a2: 5dw4 A:230-505 [316897]
        Other proteins in same PDB: d5dw4a3
        automated match to d4eu3a2
        complexed with act, imd
      2. 2169747Domain d5dw4b2: 5dw4 B:230-505 [316895]
        Other proteins in same PDB: d5dw4a3
        automated match to d4eu3a2
        complexed with act, imd
    15. Domains for 5dw5:
      1. 2169748Domain d5dw5a1: 5dw5 A:3-229 [316899]
        Other proteins in same PDB: d5dw5a3
        automated match to d4eu3a1
        complexed with 0t1, act, cl, imd
      2. 2169749Domain d5dw5a2: 5dw5 A:230-505 [316900]
        Other proteins in same PDB: d5dw5a3
        automated match to d4eu3a2
        complexed with 0t1, act, cl, imd
      3. 2169750Domain d5dw5b2: 5dw5 B:230-505 [316896]
        Other proteins in same PDB: d5dw5a3
        automated match to d4eu3a2
        complexed with 0t1, act, cl, imd
    16. Domains for 5dw6:
      1. 2169742Domain d5dw6a1: 5dw6 A:3-229 [317156]
        Other proteins in same PDB: d5dw6a3
        automated match to d4eu3a1
        complexed with 0t1, act, imd
      2. 2169743Domain d5dw6a2: 5dw6 A:230-505 [317157]
        Other proteins in same PDB: d5dw6a3
        automated match to d4eu3a2
        complexed with 0t1, act, imd
      3. 2169744Domain d5dw6b1: 5dw6 B:2-229 [317095]
        Other proteins in same PDB: d5dw6a3
        automated match to d4eu3a1
        complexed with 0t1, act, imd
      4. 2169745Domain d5dw6b2: 5dw6 B:230-505 [317096]
        Other proteins in same PDB: d5dw6a3
        automated match to d4eu3a2
        complexed with 0t1, act, imd
    17. Domains for 5e5h:
      1. 2169759Domain d5e5ha1: 5e5h A:2-229 [317571]
        Other proteins in same PDB: d5e5ha3
        automated match to d4eu3a1
        complexed with 0t1, ace, act, cl, fmt, imd
      2. 2169760Domain d5e5ha2: 5e5h A:230-505 [317572]
        Other proteins in same PDB: d5e5ha3
        automated match to d4eu3a2
        complexed with 0t1, ace, act, cl, fmt, imd
      3. 2169761Domain d5e5hb1: 5e5h B:2-229 [317414]
        Other proteins in same PDB: d5e5ha3
        automated match to d4eu3a1
        complexed with 0t1, ace, act, cl, fmt, imd
      4. 2169762Domain d5e5hb2: 5e5h B:230-505 [317415]
        Other proteins in same PDB: d5e5ha3
        automated match to d4eu3a2
        complexed with 0t1, ace, act, cl, fmt, imd
  3. 2169771Arthrobacter aurescens [TaxId:290340] [189428] (1 PDB entry)
  4. 2169774Bacillus subtilis [TaxId:1423] [225422] (1 PDB entry)
  5. 2169777Bacillus subtilis [TaxId:224308] [257310] (2 PDB entries)
    1. Domain for 4oqp:
    2. Domains for 4oqq:
      1. 2169779Domain d4oqqa_: 4oqq A: [259877]
        automated match to d3nzeb_
        complexed with bcn
      2. 2169780Domain d4oqqb_: 4oqq B: [263326]
        automated match to d3nzeb_
        complexed with bcn
  6. 2169781Borrelia burgdorferi [TaxId:224326] [225689] (1 PDB entry)
  7. 2169788Escherichia coli [TaxId:668369] [321686] (1 PDB entry)
  8. 2169793Escherichia coli [TaxId:83333] [267961] (4 PDB entries)
    1. Domains for 4l4y:
      1. 2169796Domain d4l4ya_: 4l4y A: [266618]
        automated match to d4r9na_
        protein/DNA complex
      2. 2169797Domain d4l4yb_: 4l4y B: [266619]
        automated match to d4r9na_
        protein/DNA complex
    2. Domains for 4l4z:
      1. 2169800Domain d4l4za_: 4l4z A: [266620]
        automated match to d4r9na_
        protein/DNA complex; complexed with d5x
      2. 2169801Domain d4l4zb_: 4l4z B: [266621]
        automated match to d4r9na_
        protein/DNA complex; complexed with d5x
    3. Domains for 4l50:
      1. 2169798Domain d4l50a_: 4l50 A: [266622]
        automated match to d4r9na_
        protein/DNA complex; complexed with d8x
      2. 2169799Domain d4l50b_: 4l50 B: [266623]
        automated match to d4r9na_
        protein/DNA complex; complexed with d8x
    4. Domains for 4l51:
      1. 2169794Domain d4l51a_: 4l51 A: [266624]
        automated match to d4r9na_
        protein/DNA complex; complexed with hsx
      2. 2169795Domain d4l51b_: 4l51 B: [266625]
        automated match to d4r9na_
        protein/DNA complex; complexed with hsx
  9. 2169802Fruit fly (Drosophila melanogaster) [TaxId:7227] [228466] (1 PDB entry)
  10. 2169807Helicobacter pylori [TaxId:210] [226164] (1 PDB entry)
  11. 2169810Listeria monocytogenes [TaxId:169963] [259718] (1 PDB entry)
  12. 2169812Myxococcus xanthus [TaxId:246197] [334864] (8 PDB entries)
    1. Domains for 5mzw:
      1. 2169813Domain d5mzwb_: 5mzw B: [334868]
        automated match to d1poib_
        complexed with gol
      2. 2169814Domain d5mzwd_: 5mzw D: [334962]
        automated match to d1poib_
        complexed with gol
    2. Domains for 5mzx:
      1. 2169823Domain d5mzxb_: 5mzx B: [334865]
        automated match to d1poib_
        complexed with 4ps, act, gol
      2. 2169824Domain d5mzxd_: 5mzx D: [334952]
        automated match to d1poib_
        complexed with 4ps, act, gol
    3. Domains for 5mzy:
      1. 2169815Domain d5mzyb_: 5mzy B: [334955]
        automated match to d1poib_
        complexed with 8ez, act, gol
      2. 2169816Domain d5mzyd_: 5mzy D: [334885]
        automated match to d1poib_
        complexed with 8ez, act, gol
    4. Domains for 5mzz:
      1. 2169827Domain d5mzzb_: 5mzz B: [334879]
        automated match to d1poib_
        complexed with 8ew, act, gol
      2. 2169828Domain d5mzzd_: 5mzz D: [334874]
        automated match to d1poib_
        complexed with 8ew, act, gol
    5. Domains for 5n00:
      1. 2169819Domain d5n00b_: 5n00 B: [334926]
        automated match to d1poib_
        complexed with act
      2. 2169820Domain d5n00d_: 5n00 D: [334888]
        automated match to d1poib_
        complexed with act
    6. Domains for 5n01:
      1. 2169821Domain d5n01b_: 5n01 B: [334985]
        automated match to d1poib_
        complexed with act, gol
      2. 2169822Domain d5n01d_: 5n01 D: [334932]
        automated match to d1poib_
        complexed with act, gol
    7. Domains for 5n02:
      1. 2169817Domain d5n02b_: 5n02 B: [334900]
        automated match to d1poib_
        complexed with act
      2. 2169818Domain d5n02d_: 5n02 D: [335024]
        automated match to d1poib_
        complexed with act
    8. Domains for 5n03:
      1. 2169825Domain d5n03b_: 5n03 B: [334887]
        automated match to d1poib_
        complexed with act
      2. 2169826Domain d5n03d_: 5n03 D: [334969]
        automated match to d1poib_
        complexed with act
  13. 2169829Porphyromonas gingivalis [TaxId:242619] [225221] (1 PDB entry)
  14. 2169842Vibrio fischeri [TaxId:312309] [189167] (1 PDB entry)

More info for Protein automated matches from c.124.1.0: automated matches

Timeline for Protein automated matches from c.124.1.0: automated matches: