Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1815291Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1885422Fold c.124: NagB/RpiA/CoA transferase-like [100949] (1 superfamily)
    core: 3 layers: a/b/a; parallel or mixed beta-sheet of 6 strands, order 321456
  4. 1885423Superfamily c.124.1: NagB/RpiA/CoA transferase-like [100950] (9 families) (S)
  5. 1885702Family c.124.1.0: automated matches [191609] (1 protein)
    not a true family
  6. 1885703Protein automated matches [191112] (11 species)
    not a true protein

Species:

  1. 1885704Acetobacter aceti [TaxId:435] [226493] (12 PDB entries)
    1. Domains for 4eu3:
      1. 1885709Domain d4eu3a1: 4eu3 A:2-229 [220808]
        automated match to d2g39a1
        complexed with cit, cl
      2. 1885710Domain d4eu3a2: 4eu3 A:230-514 [220809]
        automated match to d2g39a2
        complexed with cit, cl
      3. 1885711Domain d4eu3b1: 4eu3 B:2-229 [220810]
        automated match to d2g39a1
        complexed with cit, cl
      4. 1885712Domain d4eu3b2: 4eu3 B:230-505 [220811]
        automated match to d2g39a2
        complexed with cit, cl
    2. Domains for 4eu4:
      1. 1885749Domain d4eu4a1: 4eu4 A:2-229 [220812]
        automated match to d2g39a1
        complexed with cl, coa, so4
      2. 1885750Domain d4eu4a2: 4eu4 A:230-505 [220813]
        automated match to d2g39a2
        complexed with cl, coa, so4
      3. 1885751Domain d4eu4b1: 4eu4 B:2-229 [220814]
        automated match to d2g39a1
        complexed with cl, coa, so4
      4. 1885752Domain d4eu4b2: 4eu4 B:230-505 [220815]
        automated match to d2g39a2
        complexed with cl, coa, so4
    3. Domains for 4eu5:
      1. 1885717Domain d4eu5a1: 4eu5 A:2-229 [220816]
        automated match to d2g39a1
        complexed with cl, coa
      2. 1885718Domain d4eu5a2: 4eu5 A:230-514 [220817]
        automated match to d2g39a2
        complexed with cl, coa
      3. 1885719Domain d4eu5b1: 4eu5 B:2-229 [220818]
        automated match to d2g39a1
        complexed with cl, coa
      4. 1885720Domain d4eu5b2: 4eu5 B:230-505 [220819]
        automated match to d2g39a2
        complexed with cl, coa
    4. Domains for 4eu6:
      1. 1885733Domain d4eu6a1: 4eu6 A:2-229 [220820]
        automated match to d2g39a1
        complexed with act, cl, coa
      2. 1885734Domain d4eu6a2: 4eu6 A:230-514 [220821]
        automated match to d2g39a2
        complexed with act, cl, coa
      3. 1885735Domain d4eu6b1: 4eu6 B:2-229 [220822]
        automated match to d2g39a1
        complexed with act, cl, coa
      4. 1885736Domain d4eu6b2: 4eu6 B:230-505 [220823]
        automated match to d2g39a2
        complexed with act, cl, coa
    5. Domains for 4eu7:
      1. 1885713Domain d4eu7a1: 4eu7 A:2-229 [220824]
        automated match to d2g39a1
        complexed with cit, cl, coa
      2. 1885714Domain d4eu7a2: 4eu7 A:230-514 [220825]
        automated match to d2g39a2
        complexed with cit, cl, coa
      3. 1885715Domain d4eu7b1: 4eu7 B:2-229 [220826]
        automated match to d2g39a1
        complexed with cit, cl, coa
      4. 1885716Domain d4eu7b2: 4eu7 B:230-505 [220827]
        automated match to d2g39a2
        complexed with cit, cl, coa
    6. Domains for 4eu8:
      1. 1885721Domain d4eu8a1: 4eu8 A:2-229 [220828]
        automated match to d2g39a1
        complexed with cl, coa
      2. 1885722Domain d4eu8a2: 4eu8 A:230-505 [220829]
        automated match to d2g39a2
        complexed with cl, coa
      3. 1885723Domain d4eu8b1: 4eu8 B:2-229 [220830]
        automated match to d2g39a1
        complexed with cl, coa
      4. 1885724Domain d4eu8b2: 4eu8 B:230-505 [220831]
        automated match to d2g39a2
        complexed with cl, coa
    7. Domains for 4eu9:
      1. 1885705Domain d4eu9a1: 4eu9 A:2-230 [220832]
        automated match to d2g39a1
        complexed with cl, coa
      2. 1885706Domain d4eu9a2: 4eu9 A:231-514 [220833]
        automated match to d2g39a2
        complexed with cl, coa
      3. 1885707Domain d4eu9b1: 4eu9 B:2-230 [220834]
        automated match to d2g39a1
        complexed with cl, coa
      4. 1885708Domain d4eu9b2: 4eu9 B:231-505 [220835]
        automated match to d2g39a2
        complexed with cl, coa
    8. Domains for 4eua:
      1. 1885741Domain d4euaa1: 4eua A:2-230 [220836]
        automated match to d2g39a1
        complexed with cl, coa
      2. 1885742Domain d4euaa2: 4eua A:231-514 [220837]
        automated match to d2g39a2
        complexed with cl, coa
      3. 1885743Domain d4euab1: 4eua B:2-230 [220838]
        automated match to d2g39a1
        complexed with cl, coa
      4. 1885744Domain d4euab2: 4eua B:231-505 [220839]
        automated match to d2g39a2
        complexed with cl, coa
    9. Domains for 4eub:
      1. 1885729Domain d4euba1: 4eub A:2-229 [220840]
        automated match to d2g39a1
        complexed with cl, coa
      2. 1885730Domain d4euba2: 4eub A:230-505 [220841]
        automated match to d2g39a2
        complexed with cl, coa
      3. 1885731Domain d4eubb1: 4eub B:2-229 [220842]
        automated match to d2g39a1
        complexed with cl, coa
      4. 1885732Domain d4eubb2: 4eub B:230-505 [220843]
        automated match to d2g39a2
        complexed with cl, coa
    10. Domains for 4euc:
      1. 1885745Domain d4euca1: 4euc A:2-229 [220844]
        automated match to d2g39a1
        complexed with 0rq, cl
      2. 1885746Domain d4euca2: 4euc A:230-505 [220845]
        automated match to d2g39a2
        complexed with 0rq, cl
      3. 1885747Domain d4eucb1: 4euc B:2-229 [220846]
        automated match to d2g39a1
        complexed with 0rq, cl
      4. 1885748Domain d4eucb2: 4euc B:230-505 [220847]
        automated match to d2g39a2
        complexed with 0rq, cl
    11. Domains for 4eud:
      1. 1885725Domain d4euda1: 4eud A:2-229 [220848]
        automated match to d2g39a1
        complexed with cit, cl, coa
      2. 1885726Domain d4euda2: 4eud A:230-505 [220849]
        automated match to d2g39a2
        complexed with cit, cl, coa
      3. 1885727Domain d4eudb1: 4eud B:2-229 [220850]
        automated match to d2g39a1
        complexed with cit, cl, coa
      4. 1885728Domain d4eudb2: 4eud B:230-505 [220851]
        automated match to d2g39a2
        complexed with cit, cl, coa
    12. Domains for 4fac:
      1. 1885737Domain d4faca1: 4fac A:2-229 [221094]
        automated match to d2g39a1
        complexed with 0t1, ace, act, cl
      2. 1885738Domain d4faca2: 4fac A:230-505 [221095]
        automated match to d2g39a2
        complexed with 0t1, ace, act, cl
      3. 1885739Domain d4facb1: 4fac B:2-229 [221096]
        automated match to d2g39a1
        complexed with 0t1, ace, act, cl
      4. 1885740Domain d4facb2: 4fac B:230-505 [221097]
        automated match to d2g39a2
        complexed with 0t1, ace, act, cl
  2. 1885753Arthrobacter aurescens [TaxId:290340] [189428] (1 PDB entry)
  3. 1885756Bacillus subtilis [TaxId:1423] [225422] (1 PDB entry)
  4. 1885759Bacillus subtilis [TaxId:224308] [257310] (2 PDB entries)
    1. Domain for 4oqp:
    2. Domains for 4oqq:
      1. 1885761Domain d4oqqa_: 4oqq A: [259877]
        automated match to d3nzeb_
        complexed with bcn
      2. 1885762Domain d4oqqb_: 4oqq B: [263326]
        automated match to d3nzeb_
        complexed with bcn
  5. 1885763Borrelia burgdorferi [TaxId:224326] [225689] (1 PDB entry)
  6. 1885770Escherichia coli [TaxId:83333] [267961] (4 PDB entries)
    1. Domains for 4l4y:
      1. 1885773Domain d4l4ya_: 4l4y A: [266618]
        automated match to d4r9na_
        protein/DNA complex
      2. 1885774Domain d4l4yb_: 4l4y B: [266619]
        automated match to d4r9na_
        protein/DNA complex
    2. Domains for 4l4z:
      1. 1885777Domain d4l4za_: 4l4z A: [266620]
        automated match to d4r9na_
        protein/DNA complex; complexed with d5x
      2. 1885778Domain d4l4zb_: 4l4z B: [266621]
        automated match to d4r9na_
        protein/DNA complex; complexed with d5x
    3. Domains for 4l50:
      1. 1885775Domain d4l50a_: 4l50 A: [266622]
        automated match to d4r9na_
        protein/DNA complex; complexed with d8x
      2. 1885776Domain d4l50b_: 4l50 B: [266623]
        automated match to d4r9na_
        protein/DNA complex; complexed with d8x
    4. Domains for 4l51:
      1. 1885771Domain d4l51a_: 4l51 A: [266624]
        automated match to d4r9na_
        protein/DNA complex; complexed with hsx
      2. 1885772Domain d4l51b_: 4l51 B: [266625]
        automated match to d4r9na_
        protein/DNA complex; complexed with hsx
  7. 1885779Fruit fly (Drosophila melanogaster) [TaxId:7227] [228466] (1 PDB entry)
  8. 1885784Helicobacter pylori [TaxId:210] [226164] (1 PDB entry)
  9. 1885787Listeria monocytogenes [TaxId:169963] [259718] (1 PDB entry)
  10. 1885789Porphyromonas gingivalis [TaxId:242619] [225221] (1 PDB entry)
  11. 1885802Vibrio fischeri [TaxId:312309] [189167] (1 PDB entry)

More info for Protein automated matches from c.124.1.0: automated matches

Timeline for Protein automated matches from c.124.1.0: automated matches: