SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2129158Fold c.65: Formyltransferase [53327] (1 superfamily)
    3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214567; strand 6 is antiparallel to the rest
  4. 2129159Superfamily c.65.1: Formyltransferase [53328] (2 families) (S)
  5. 2129260Family c.65.1.0: automated matches [191608] (1 protein)
    not a true family
  6. 2129261Protein automated matches [191110] (11 species)
    not a true protein

Species:

  1. 2129262Anaplasma phagocytophilum [TaxId:212042] [189161] (1 PDB entry)
  2. 2129267Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [226570] (2 PDB entries)
    1. Domains for 3rfo:
      1. 2129272Domain d3rfoa1: 3rfo A:1-204 [306448]
        Other proteins in same PDB: d3rfoa2, d3rfoa3, d3rfob2, d3rfob3, d3rfoc2, d3rfoc3, d3rfod2, d3rfod3
        automated match to d4iqfa1
        complexed with gol, pge, so4
      2. 2129273Domain d3rfob1: 3rfo B:1-204 [306451]
        Other proteins in same PDB: d3rfoa2, d3rfoa3, d3rfob2, d3rfob3, d3rfoc2, d3rfoc3, d3rfod2, d3rfod3
        automated match to d4iqfa1
        complexed with gol, pge, so4
      3. 2129274Domain d3rfoc1: 3rfo C:1-204 [306454]
        Other proteins in same PDB: d3rfoa2, d3rfoa3, d3rfob2, d3rfob3, d3rfoc2, d3rfoc3, d3rfod2, d3rfod3
        automated match to d4iqfa1
        complexed with gol, pge, so4
      4. 2129275Domain d3rfod1: 3rfo D:1-204 [306457]
        Other proteins in same PDB: d3rfoa2, d3rfoa3, d3rfob2, d3rfob3, d3rfoc2, d3rfoc3, d3rfod2, d3rfod3
        automated match to d4iqfa1
        complexed with gol, pge, so4
    2. Domains for 4iqf:
      1. 2129268Domain d4iqfa1: 4iqf A:1-204 [223312]
        Other proteins in same PDB: d4iqfa2, d4iqfa3, d4iqfb2, d4iqfb3, d4iqfc2, d4iqfc3, d4iqfd2, d4iqfd3
        automated match to d1fmta2
        complexed with gol, pg5, so4
      2. 2129269Domain d4iqfb1: 4iqf B:1-204 [223314]
        Other proteins in same PDB: d4iqfa2, d4iqfa3, d4iqfb2, d4iqfb3, d4iqfc2, d4iqfc3, d4iqfd2, d4iqfd3
        automated match to d1fmta2
        complexed with gol, pg5, so4
      3. 2129270Domain d4iqfc1: 4iqf C:1-204 [223316]
        Other proteins in same PDB: d4iqfa2, d4iqfa3, d4iqfb2, d4iqfb3, d4iqfc2, d4iqfc3, d4iqfd2, d4iqfd3
        automated match to d1fmta2
        complexed with gol, pg5, so4
      4. 2129271Domain d4iqfd1: 4iqf D:1-204 [223318]
        Other proteins in same PDB: d4iqfa2, d4iqfa3, d4iqfb2, d4iqfb3, d4iqfc2, d4iqfc3, d4iqfd2, d4iqfd3
        automated match to d1fmta2
        complexed with gol, pg5, so4
  3. 2129276Bacillus halodurans [TaxId:272558] [233206] (1 PDB entry)
  4. 2129279Brucella melitensis [TaxId:224914] [226345] (1 PDB entry)
  5. 2129281Campylobacter jejuni [TaxId:192222] [275366] (1 PDB entry)
  6. 2129284Coxiella burnetii [TaxId:777] [189726] (2 PDB entries)
    1. Domain for 3tqq:
    2. Domain for 3tqr:
  7. 2129287Geobacillus kaustophilus [TaxId:235909] [231809] (1 PDB entry)
  8. 2129289Streptococcus pneumoniae [TaxId:170187] [268856] (1 PDB entry)
  9. 2129291Symbiobacterium toebii [TaxId:120580] [311272] (1 PDB entry)
  10. 2129293Vibrio cholerae [TaxId:666] [226045] (1 PDB entry)
  11. 2285426Pseudomonas aeruginosa [TaxId:208964] [328727] (1 PDB entry)

More info for Protein automated matches from c.65.1.0: automated matches

Timeline for Protein automated matches from c.65.1.0: automated matches: