SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2038595Fold b.11: gamma-Crystallin-like [49694] (1 superfamily)
    sandwich; 8 strands in 2 sheets; greek-key
    duplication: has internal pseudo twofold symmetry
  4. 2038596Superfamily b.11.1: gamma-Crystallin-like [49695] (7 families) (S)
  5. 2038718Family b.11.1.0: automated matches [191607] (1 protein)
    not a true family
  6. 2038719Protein automated matches [191109] (11 species)
    not a true protein

Species:

  1. 2038720Ciona intestinalis [TaxId:7719] [225023] (1 PDB entry)
  2. 2038723Clostridium beijerinckii [TaxId:290402] [189152] (7 PDB entries)
    1. Domains for 3i9h:
      1. 2038742Domain d3i9ha_: 3i9h A: [178166]
        automated match to d1npsa_
        complexed with ca
      2. 2038743Domain d3i9hb_: 3i9h B: [178167]
        automated match to d1npsa_
        complexed with ca
      3. 2038744Domain d3i9hc_: 3i9h C: [178168]
        automated match to d1npsa_
        complexed with ca
      4. 2038745Domain d3i9hd_: 3i9h D: [178169]
        automated match to d1npsa_
        complexed with ca
      5. 2038746Domain d3i9he_: 3i9h E: [178170]
        automated match to d1npsa_
        complexed with ca
      6. 2038747Domain d3i9hf_: 3i9h F: [178171]
        automated match to d1npsa_
        complexed with ca
      7. 2038748Domain d3i9hg_: 3i9h G: [178172]
        automated match to d1npsa_
        complexed with ca
      8. 2038749Domain d3i9hh_: 3i9h H: [178173]
        automated match to d1npsa_
        complexed with ca
    2. Domain for 3iaj:
    3. Domain for 3sny:
    4. Domain for 3snz:
    5. Domains for 3so0:
      1. 2038733Domain d3so0a_: 3so0 A: [185452]
        automated match to d1npsa_
        complexed with ca; mutant
      2. 2038734Domain d3so0b_: 3so0 B: [185453]
        automated match to d1npsa_
        complexed with ca; mutant
      3. 2038735Domain d3so0c_: 3so0 C: [185454]
        automated match to d1npsa_
        complexed with ca; mutant
      4. 2038736Domain d3so0d_: 3so0 D: [185455]
        automated match to d1npsa_
        complexed with ca; mutant
      5. 2038737Domain d3so0e_: 3so0 E: [185456]
        automated match to d1npsa_
        complexed with ca; mutant
      6. 2038738Domain d3so0f_: 3so0 F: [185457]
        automated match to d1npsa_
        complexed with ca; mutant
      7. 2038739Domain d3so0g_: 3so0 G: [185458]
        automated match to d1npsa_
        complexed with ca; mutant
      8. 2038740Domain d3so0h_: 3so0 H: [185459]
        automated match to d1npsa_
        complexed with ca; mutant
    6. Domains for 3so1:
      1. 2038725Domain d3so1a_: 3so1 A: [185460]
        automated match to d1npsa_
        complexed with ca, so4; mutant
      2. 2038726Domain d3so1b_: 3so1 B: [185461]
        automated match to d1npsa_
        complexed with ca, so4; mutant
      3. 2038727Domain d3so1c_: 3so1 C: [185462]
        automated match to d1npsa_
        complexed with ca, so4; mutant
      4. 2038728Domain d3so1d_: 3so1 D: [185463]
        automated match to d1npsa_
        complexed with ca, so4; mutant
      5. 2038729Domain d3so1e_: 3so1 E: [185464]
        automated match to d1npsa_
        complexed with ca, so4; mutant
      6. 2038730Domain d3so1f_: 3so1 F: [185465]
        automated match to d1npsa_
        complexed with ca, so4; mutant
      7. 2038731Domain d3so1g_: 3so1 G: [185466]
        automated match to d1npsa_
        complexed with ca, so4; mutant
      8. 2038732Domain d3so1h_: 3so1 H: [185467]
        automated match to d1npsa_
        complexed with ca, so4; mutant
    7. Domain for 5ht8:
  3. 2038751Cow (Bos taurus) [TaxId:9913] [276752] (2 PDB entries)
    1. Domain for 4w9a:
    2. Domain for 4w9b:
  4. 2038754Flavobacterium johnsoniae [TaxId:376686] [189150] (1 PDB entry)
  5. 2038763Geodia cydonium [TaxId:6047] [256298] (1 PDB entry)
  6. 2038765Hahella chejuensis [TaxId:349521] [255368] (1 PDB entry)
  7. 2038767Human (Homo sapiens) [TaxId:9606] [230909] (10 PDB entries)
    1. Domain for 2dad:
    2. Domains for 2jdf:
      1. 2038769Domain d2jdfa1: 2jdf A:1-85 [230910]
        Other proteins in same PDB: d2jdfa3
        automated match to d1amma1
      2. 2038770Domain d2jdfa2: 2jdf A:86-175 [230939]
        Other proteins in same PDB: d2jdfa3
        automated match to d1amma2
    3. Domain for 2jdg:
    4. Domains for 2m3t:
      1. 2038779Domain d2m3ta1: 2m3t A:2-91 [243094]
        Other proteins in same PDB: d2m3ta3
        automated match to d1i5ia1
      2. 2038780Domain d2m3ta2: 2m3t A:92-178 [243095]
        Other proteins in same PDB: d2m3ta3
        automated match to d1i5ia2
    5. Domains for 2m3u:
      1. 2038781Domain d2m3ua1: 2m3u A:2-91 [243096]
        Other proteins in same PDB: d2m3ua3
        automated match to d1i5ia1
      2. 2038782Domain d2m3ua2: 2m3u A:92-178 [243097]
        Other proteins in same PDB: d2m3ua3
        automated match to d1i5ia2
    6. Domain for 2nbr:
    7. Domain for 3lwk:
    8. Domains for 3qk3:
      1. 2038773Domain d3qk3a_: 3qk3 A: [248919]
        automated match to d4gr7a_
        complexed with edo, so4
      2. 2038774Domain d3qk3b_: 3qk3 B: [248920]
        automated match to d4gr7a_
        complexed with edo, so4
      3. 2038775Domain d3qk3c_: 3qk3 C: [248921]
        automated match to d4gr7a_
        complexed with edo, so4
    9. Domains for 4gr7:
      1. 2038771Domain d4gr7a_: 4gr7 A: [234493]
        automated match to d1bd7a_
        complexed with po4; mutant
      2. 2038772Domain d4gr7x_: 4gr7 X: [240162]
        automated match to d4gr7a_
        complexed with po4; mutant
    10. Domains for 4jgf:
      1. 2038777Domain d4jgfa_: 4jgf A: [240339]
        automated match to d4jgfb_
        mutant
      2. 2038778Domain d4jgfb_: 4jgf B: [234987]
        automated match to d1bd7a_
        mutant
  8. 2038784Methanosarcina acetivorans [TaxId:2214] [232522] (3 PDB entries)
    1. Domain for 2k1w:
    2. Domain for 2k1x:
    3. Domains for 3hz2:
      1. 2038785Domain d3hz2a_: 3hz2 A: [232525]
        automated match to d1ha4a_
        complexed with ca
      2. 2038786Domain d3hz2b_: 3hz2 B: [232523]
        automated match to d1ha4a_
        complexed with ca
      3. 2038787Domain d3hz2c_: 3hz2 C: [232527]
        automated match to d1ha4a_
        complexed with ca
      4. 2038788Domain d3hz2d_: 3hz2 D: [232526]
        automated match to d1ha4a_
        complexed with ca
  9. 2038791Mouse (Mus musculus) [TaxId:10090] [226633] (2 PDB entries)
    1. Domains for 2v2u:
      1. 2038794Domain d2v2ua1: 2v2u A:1-85 [227312]
        automated match to d1elpa1
      2. 2038795Domain d2v2ua2: 2v2u A:86-173 [227314]
        automated match to d1elpa2
      3. 2038796Domain d2v2ub1: 2v2u B:1-85 [227311]
        automated match to d1elpa1
      4. 2038797Domain d2v2ub2: 2v2u B:86-173 [227313]
        automated match to d1elpa2
    2. Domains for 4fd9:
      1. 2038792Domain d4fd9a_: 4fd9 A: [221150]
        automated match to d1e7na_
      2. 2038793Domain d4fd9b_: 4fd9 B: [221151]
        automated match to d1e7na_
  10. 2038798Zebrafish (Danio rerio) [TaxId:7955] [255476] (1 PDB entry)
  11. 2286144Methanosarcina acetivorans [TaxId:188937] [329445] (1 PDB entry)

More info for Protein automated matches from b.11.1.0: automated matches

Timeline for Protein automated matches from b.11.1.0: automated matches: