Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2038595Fold b.11: gamma-Crystallin-like [49694] (1 superfamily)
    sandwich; 8 strands in 2 sheets; greek-key
    duplication: has internal pseudo twofold symmetry
  4. 2038596Superfamily b.11.1: gamma-Crystallin-like [49695] (7 families) (S)
  5. 2038718Family b.11.1.0: automated matches [191607] (1 protein)
    not a true family
  6. 2038719Protein automated matches [191109] (11 species)
    not a true protein

Species:

  1. 2038720Ciona intestinalis [TaxId:7719] [225023] (1 PDB entry)
  2. 2038723Clostridium beijerinckii [TaxId:290402] [189152] (7 PDB entries)
    1. Domains for 3i9h:
      1. 2038742Domain d3i9ha_: 3i9h A: [178166]
        automated match to d1npsa_
        complexed with ca
      2. 2038743Domain d3i9hb_: 3i9h B: [178167]
        automated match to d1npsa_
        complexed with ca
      3. 2038744Domain d3i9hc_: 3i9h C: [178168]
        automated match to d1npsa_
        complexed with ca
      4. 2038745Domain d3i9hd_: 3i9h D: [178169]
        automated match to d1npsa_
        complexed with ca
      5. 2038746Domain d3i9he_: 3i9h E: [178170]
        automated match to d1npsa_
        complexed with ca
      6. 2038747Domain d3i9hf_: 3i9h F: [178171]
        automated match to d1npsa_
        complexed with ca
      7. 2038748Domain d3i9hg_: 3i9h G: [178172]
        automated match to d1npsa_
        complexed with ca
      8. 2038749Domain d3i9hh_: 3i9h H: [178173]
        automated match to d1npsa_
        complexed with ca
    2. Domain for 3iaj:
    3. Domain for 3sny:
    4. Domain for 3snz:
    5. Domains for 3so0:
      1. 2038733Domain d3so0a_: 3so0 A: [185452]
        automated match to d1npsa_
        complexed with ca; mutant
      2. 2038734Domain d3so0b_: 3so0 B: [185453]
        automated match to d1npsa_
        complexed with ca; mutant
      3. 2038735Domain d3so0c_: 3so0 C: [185454]
        automated match to d1npsa_
        complexed with ca; mutant
      4. 2038736Domain d3so0d_: 3so0 D: [185455]
        automated match to d1npsa_
        complexed with ca; mutant
      5. 2038737Domain d3so0e_: 3so0 E: [185456]
        automated match to d1npsa_
        complexed with ca; mutant
      6. 2038738Domain d3so0f_: 3so0 F: [185457]
        automated match to d1npsa_
        complexed with ca; mutant
      7. 2038739Domain d3so0g_: 3so0 G: [185458]
        automated match to d1npsa_
        complexed with ca; mutant
      8. 2038740Domain d3so0h_: 3so0 H: [185459]
        automated match to d1npsa_
        complexed with ca; mutant
    6. Domains for 3so1:
      1. 2038725Domain d3so1a_: 3so1 A: [185460]
        automated match to d1npsa_
        complexed with ca, so4; mutant
      2. 2038726Domain d3so1b_: 3so1 B: [185461]
        automated match to d1npsa_
        complexed with ca, so4; mutant
      3. 2038727Domain d3so1c_: 3so1 C: [185462]
        automated match to d1npsa_
        complexed with ca, so4; mutant
      4. 2038728Domain d3so1d_: 3so1 D: [185463]
        automated match to d1npsa_
        complexed with ca, so4; mutant
      5. 2038729Domain d3so1e_: 3so1 E: [185464]
        automated match to d1npsa_
        complexed with ca, so4; mutant
      6. 2038730Domain d3so1f_: 3so1 F: [185465]
        automated match to d1npsa_
        complexed with ca, so4; mutant
      7. 2038731Domain d3so1g_: 3so1 G: [185466]
        automated match to d1npsa_
        complexed with ca, so4; mutant
      8. 2038732Domain d3so1h_: 3so1 H: [185467]
        automated match to d1npsa_
        complexed with ca, so4; mutant
    7. Domain for 5ht8:
  3. 2038751Cow (Bos taurus) [TaxId:9913] [276752] (2 PDB entries)
    1. Domain for 4w9a:
    2. Domain for 4w9b:
  4. 2038754Flavobacterium johnsoniae [TaxId:376686] [189150] (1 PDB entry)
  5. 2038763Geodia cydonium [TaxId:6047] [256298] (1 PDB entry)
  6. 2038765Hahella chejuensis [TaxId:349521] [255368] (1 PDB entry)
  7. 2038767Human (Homo sapiens) [TaxId:9606] [230909] (10 PDB entries)
    1. Domain for 2dad:
    2. Domains for 2jdf:
      1. 2038769Domain d2jdfa1: 2jdf A:1-85 [230910]
        Other proteins in same PDB: d2jdfa3
        automated match to d1amma1
      2. 2038770Domain d2jdfa2: 2jdf A:86-175 [230939]
        Other proteins in same PDB: d2jdfa3
        automated match to d1amma2
    3. Domain for 2jdg:
    4. Domains for 2m3t:
      1. 2038779Domain d2m3ta1: 2m3t A:2-91 [243094]
        Other proteins in same PDB: d2m3ta3
        automated match to d1i5ia1
      2. 2038780Domain d2m3ta2: 2m3t A:92-178 [243095]
        Other proteins in same PDB: d2m3ta3
        automated match to d1i5ia2
    5. Domains for 2m3u:
      1. 2038781Domain d2m3ua1: 2m3u A:2-91 [243096]
        Other proteins in same PDB: d2m3ua3
        automated match to d1i5ia1
      2. 2038782Domain d2m3ua2: 2m3u A:92-178 [243097]
        Other proteins in same PDB: d2m3ua3
        automated match to d1i5ia2
    6. Domain for 2nbr:
    7. Domain for 3lwk:
    8. Domains for 3qk3:
      1. 2038773Domain d3qk3a_: 3qk3 A: [248919]
        automated match to d4gr7a_
        complexed with edo, so4
      2. 2038774Domain d3qk3b_: 3qk3 B: [248920]
        automated match to d4gr7a_
        complexed with edo, so4
      3. 2038775Domain d3qk3c_: 3qk3 C: [248921]
        automated match to d4gr7a_
        complexed with edo, so4
    9. Domains for 4gr7:
      1. 2038771Domain d4gr7a_: 4gr7 A: [234493]
        automated match to d1bd7a_
        complexed with po4; mutant
      2. 2038772Domain d4gr7x_: 4gr7 X: [240162]
        automated match to d4gr7a_
        complexed with po4; mutant
    10. Domains for 4jgf:
      1. 2038777Domain d4jgfa_: 4jgf A: [240339]
        automated match to d4jgfb_
        mutant
      2. 2038778Domain d4jgfb_: 4jgf B: [234987]
        automated match to d1bd7a_
        mutant
  8. 2038784Methanosarcina acetivorans [TaxId:2214] [232522] (3 PDB entries)
    1. Domain for 2k1w:
    2. Domain for 2k1x:
    3. Domains for 3hz2:
      1. 2038785Domain d3hz2a_: 3hz2 A: [232525]
        automated match to d1ha4a_
        complexed with ca
      2. 2038786Domain d3hz2b_: 3hz2 B: [232523]
        automated match to d1ha4a_
        complexed with ca
      3. 2038787Domain d3hz2c_: 3hz2 C: [232527]
        automated match to d1ha4a_
        complexed with ca
      4. 2038788Domain d3hz2d_: 3hz2 D: [232526]
        automated match to d1ha4a_
        complexed with ca
  9. 2038791Mouse (Mus musculus) [TaxId:10090] [226633] (2 PDB entries)
    1. Domains for 2v2u:
      1. 2038794Domain d2v2ua1: 2v2u A:1-85 [227312]
        automated match to d1elpa1
      2. 2038795Domain d2v2ua2: 2v2u A:86-173 [227314]
        automated match to d1elpa2
      3. 2038796Domain d2v2ub1: 2v2u B:1-85 [227311]
        automated match to d1elpa1
      4. 2038797Domain d2v2ub2: 2v2u B:86-173 [227313]
        automated match to d1elpa2
    2. Domains for 4fd9:
      1. 2038792Domain d4fd9a_: 4fd9 A: [221150]
        automated match to d1e7na_
      2. 2038793Domain d4fd9b_: 4fd9 B: [221151]
        automated match to d1e7na_
  10. 2038798Zebrafish (Danio rerio) [TaxId:7955] [255476] (1 PDB entry)
  11. 2286144Methanosarcina acetivorans [TaxId:188937] [329445] (1 PDB entry)

More info for Protein automated matches from b.11.1.0: automated matches

Timeline for Protein automated matches from b.11.1.0: automated matches: