SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2002464Fold a.93: Heme-dependent peroxidases [48112] (1 superfamily)
    multihelical; consists of two all-alpha domains
  4. 2002465Superfamily a.93.1: Heme-dependent peroxidases [48113] (4 families) (S)
  5. 2003088Family a.93.1.0: automated matches [191605] (1 protein)
    not a true family
  6. 2003089Protein automated matches [191104] (11 species)
    not a true protein

Species:

  1. 2003090Haloarcula marismortui [TaxId:272569] [226809] (7 PDB entries)
    1. Domains for 3uw8:
      1. 2003111Domain d3uw8a1: 3uw8 A:18-423 [217545]
        Other proteins in same PDB: d3uw8b1, d3uw8b2
        automated match to d1ub2a1
        complexed with hem
      2. 2003112Domain d3uw8a2: 3uw8 A:424-731 [217546]
        Other proteins in same PDB: d3uw8b1, d3uw8b2
        automated match to d1ub2a2
        complexed with hem
    2. Domains for 3vlh:
      1. 2003099Domain d3vlha1: 3vlh A:18-423 [217914]
        automated match to d1ub2a1
        complexed with hem
      2. 2003100Domain d3vlha2: 3vlh A:424-731 [217915]
        automated match to d1ub2a2
        complexed with hem
      3. 2003101Domain d3vlhb1: 3vlh B:18-423 [217916]
        automated match to d1ub2a1
        complexed with hem
      4. 2003102Domain d3vlhb2: 3vlh B:424-731 [217917]
        automated match to d1ub2a2
        complexed with hem
    3. Domains for 3vli:
      1. 2003095Domain d3vlia1: 3vli A:18-423 [217918]
        automated match to d1ub2a1
        complexed with cyn, hem
      2. 2003096Domain d3vlia2: 3vli A:424-731 [217919]
        automated match to d1ub2a2
        complexed with cyn, hem
      3. 2003097Domain d3vlib1: 3vli B:18-423 [217920]
        automated match to d1ub2a1
        complexed with cyn, hem
      4. 2003098Domain d3vlib2: 3vli B:424-731 [217921]
        automated match to d1ub2a2
        complexed with cyn, hem
    4. Domains for 3vlj:
      1. 2003091Domain d3vlja1: 3vlj A:18-423 [217922]
        automated match to d1ub2a1
        complexed with cyn, ddj, hem
      2. 2003092Domain d3vlja2: 3vlj A:424-731 [217923]
        automated match to d1ub2a2
        complexed with cyn, ddj, hem
      3. 2003093Domain d3vljb1: 3vlj B:18-423 [217924]
        automated match to d1ub2a1
        complexed with cyn, ddj, hem
      4. 2003094Domain d3vljb2: 3vlj B:424-731 [217925]
        automated match to d1ub2a2
        complexed with cyn, ddj, hem
    5. Domains for 3vlk:
      1. 2003103Domain d3vlka1: 3vlk A:18-423 [217926]
        automated match to d1ub2a1
        complexed with hem
      2. 2003104Domain d3vlka2: 3vlk A:424-731 [217927]
        automated match to d1ub2a2
        complexed with hem
      3. 2003105Domain d3vlkb1: 3vlk B:18-423 [217928]
        automated match to d1ub2a1
        complexed with hem
      4. 2003106Domain d3vlkb2: 3vlk B:424-731 [217929]
        automated match to d1ub2a2
        complexed with hem
    6. Domains for 3vll:
      1. 2003107Domain d3vlla1: 3vll A:18-423 [217930]
        automated match to d1ub2a1
        complexed with hem, sha
      2. 2003108Domain d3vlla2: 3vll A:424-731 [217931]
        automated match to d1ub2a2
        complexed with hem, sha
      3. 2003109Domain d3vllb1: 3vll B:18-423 [217932]
        automated match to d1ub2a1
        complexed with hem, sha
      4. 2003110Domain d3vllb2: 3vll B:424-731 [217933]
        automated match to d1ub2a2
        complexed with hem, sha
    7. Domains for 3vlm:
      1. 2003113Domain d3vlma1: 3vlm A:29-423 [217934]
        automated match to d1ub2a1
        complexed with hem
      2. 2003114Domain d3vlma2: 3vlm A:424-728 [217935]
        automated match to d1ub2a2
        complexed with hem
      3. 2003115Domain d3vlmb1: 3vlm B:29-423 [217936]
        automated match to d1ub2a1
        complexed with hem
      4. 2003116Domain d3vlmb2: 3vlm B:424-728 [217937]
        automated match to d1ub2a2
        complexed with hem
  2. 2003117Magnaporthe oryzae [TaxId:242507] [226424] (5 PDB entries)
    1. Domains for 3ut2:
      1. 2003118Domain d3ut2a1: 3ut2 A:50-475 [217508]
        automated match to d1ub2a1
        complexed with hem
      2. 2003119Domain d3ut2a2: 3ut2 A:476-784 [217509]
        automated match to d1ub2a2
        complexed with hem
      3. 2003120Domain d3ut2b1: 3ut2 B:51-475 [217510]
        automated match to d1ub2a1
        complexed with hem
      4. 2003121Domain d3ut2b2: 3ut2 B:476-782 [217511]
        automated match to d1ub2a2
        complexed with hem
    2. Domains for 5cjh:
      1. 2003122Domain d5cjha1: 5cjh A:51-475 [276540]
        automated match to d3ut2a1
        complexed with 522, oh
      2. 2003123Domain d5cjha2: 5cjh A:476-784 [276541]
        automated match to d3ut2a2
        complexed with 522, oh
      3. 2003124Domain d5cjhb1: 5cjh B:51-475 [276538]
        automated match to d3ut2a1
        complexed with 522, oh
      4. 2003125Domain d5cjhb2: 5cjh B:476-783 [276539]
        automated match to d3ut2a2
        complexed with 522, oh
    3. Domains for 5jhx:
      1. 2275502Domain d5jhxb1: 5jhx B:50-475 [318803]
        automated match to d3ut2a1
        complexed with flc, hem
      2. 2275503Domain d5jhxb2: 5jhx B:476-783 [318804]
        automated match to d3ut2a2
        complexed with flc, hem
      3. 2275536Domain d5jhxa1: 5jhx A:50-475 [318837]
        automated match to d3ut2a1
        complexed with flc, hem
      4. 2275537Domain d5jhxa2: 5jhx A:476-784 [318838]
        automated match to d3ut2a2
        complexed with flc, hem
    4. Domains for 5jhy:
      1. 2275533Domain d5jhyb1: 5jhy B:51-475 [318834]
        automated match to d3ut2a1
        complexed with hem
      2. 2275534Domain d5jhyb2: 5jhy B:476-784 [318835]
        automated match to d3ut2a2
        complexed with hem
      3. 2275567Domain d5jhya1: 5jhy A:50-475 [318868]
        automated match to d3ut2a1
        complexed with hem
      4. 2275568Domain d5jhya2: 5jhy A:476-784 [318869]
        automated match to d3ut2a2
        complexed with hem
    5. Domains for 5jhz:
      1. 2275540Domain d5jhza1: 5jhz A:50-475 [318841]
        automated match to d3ut2a1
        complexed with hem
      2. 2275541Domain d5jhza2: 5jhz A:476-784 [318842]
        automated match to d3ut2a2
        complexed with hem
      3. 2275550Domain d5jhzb1: 5jhz B:50-475 [318851]
        automated match to d3ut2a1
        complexed with hem
      4. 2275552Domain d5jhzb2: 5jhz B:476-784 [318853]
        automated match to d3ut2a2
        complexed with hem
  3. 2003126Mycobacterium tuberculosis [TaxId:1773] [254876] (2 PDB entries)
    1. Domains for 2cca:
      1. 2003131Domain d2ccaa1: 2cca A:26-432 [130222]
        automated match to d4c50a1
        complexed with hem; mutant
      2. 2003132Domain d2ccaa2: 2cca A:433-740 [130223]
        automated match to d4c50a2
        complexed with hem; mutant
      3. 2003133Domain d2ccab1: 2cca B:26-432 [130224]
        automated match to d4c50a1
        complexed with hem; mutant
      4. 2003134Domain d2ccab2: 2cca B:433-740 [130225]
        automated match to d4c50a2
        complexed with hem; mutant
    2. Domains for 2ccd:
      1. 2003127Domain d2ccda1: 2ccd A:26-432 [130228]
        automated match to d4c50a1
        complexed with hem; mutant
      2. 2003128Domain d2ccda2: 2ccd A:433-740 [130229]
        automated match to d4c50a2
        complexed with hem; mutant
      3. 2003129Domain d2ccdb1: 2ccd B:26-432 [130230]
        automated match to d4c50a1
        complexed with hem; mutant
      4. 2003130Domain d2ccdb2: 2ccd B:433-740 [130231]
        automated match to d4c50a2
        complexed with hem; mutant
  4. 2003135Mycobacterium tuberculosis [TaxId:83332] [228914] (2 PDB entries)
    1. Domains for 4c50:
      1. 2003140Domain d4c50a1: 4c50 A:25-432 [228915]
        automated match to d3ut2a1
        complexed with act, glc, hem; mutant
      2. 2003141Domain d4c50a2: 4c50 A:433-740 [228916]
        automated match to d3ut2a2
        complexed with act, glc, hem; mutant
      3. 2003142Domain d4c50b1: 4c50 B:25-432 [234290]
        automated match to d4c50a1
        complexed with act, glc, hem; mutant
      4. 2003143Domain d4c50b2: 4c50 B:433-740 [234291]
        automated match to d4c50a2
        complexed with act, glc, hem; mutant
    2. Domains for 4c51:
      1. 2003136Domain d4c51a1: 4c51 A:24-432 [251339]
        automated match to d4c50a1
        complexed with glc, hem; mutant
      2. 2003137Domain d4c51a2: 4c51 A:433-740 [251340]
        automated match to d4c50a2
        complexed with glc, hem; mutant
      3. 2003138Domain d4c51b1: 4c51 B:24-432 [251341]
        automated match to d4c50a1
        complexed with glc, hem; mutant
      4. 2003139Domain d4c51b2: 4c51 B:433-740 [251342]
        automated match to d4c50a2
        complexed with glc, hem; mutant
  5. 2003144Oyster mushroom (Pleurotus ostreatus) [TaxId:5322] [235966] (11 PDB entries)
    1. Domain for 4blk:
    2. Domain for 4bll:
    3. Domain for 4bln:
    4. Domain for 4blx:
    5. Domain for 4bly:
    6. Domains for 4blz:
      1. 2003154Domain d4blza_: 4blz A: [235973]
        automated match to d2vkaa_
        complexed with ca, hem
      2. 2003155Domain d4blzb_: 4blz B: [240029]
        automated match to d4blka_
        complexed with ca, hem
    7. Domain for 4bm0:
    8. Domains for 4bm1:
      1. 2003147Domain d4bm1a_: 4bm1 A: [235967]
        automated match to d3q3ua_
        complexed with ca, cit, hem, so4
      2. 2003148Domain d4bm1b_: 4bm1 B: [235969]
        automated match to d3q3ua_
        complexed with ca, cit, hem, so4
    9. Domain for 4bm2:
    10. Domain for 4bm3:
    11. Domain for 4bm4:
  6. 2003158Pleurotus eryngii [TaxId:5323] [226503] (19 PDB entries)
    1. Domain for 2boq:
    2. Domain for 2vka:
    3. Domain for 2w23:
    4. Domains for 3fjw:
      1. 2003173Domain d3fjwa_: 3fjw A: [232165]
        automated match to d4fcna_
        complexed with ca, hem, man, mn, nag
      2. 2003174Domain d3fjwb_: 3fjw B: [232166]
        automated match to d4fcna_
        complexed with ca, hem, man, mn, nag
    5. Domain for 3fkg:
    6. Domain for 3fm1:
    7. Domain for 3fm4:
    8. Domain for 3fm6:
    9. Domain for 3fmu:
    10. Domain for 4fcn:
    11. Domain for 4fcs:
    12. Domain for 4fdq:
    13. Domain for 4fef:
    14. Domain for 4g05:
    15. Domain for 5abn:
    16. Domain for 5abo:
    17. Domain for 5abq:
    18. Domains for 5fnb:
      1. 2276238Domain d5fnba_: 5fnb A: [319539]
        automated match to d3fjwa_
        complexed with ca, hem, so4; mutant
      2. 2276357Domain d5fnbb_: 5fnb B: [319658]
        automated match to d3fjwa_
        complexed with ca, hem, so4; mutant
    19. Domain for 5fne:
  7. 2003177Roystonea regia [TaxId:145709] [189129] (1 PDB entry)
  8. 2003179Synechococcus elongatus [TaxId:1140] [237745] (3 PDB entries)
    1. Domains for 3wnu:
      1. 2003182Domain d3wnua1: 3wnu A:11-429 [237746]
        automated match to d3n3pb1
        complexed with heb, na
      2. 2003183Domain d3wnua2: 3wnu A:430-720 [237747]
        automated match to d3n3qb2
        complexed with heb, na
    2. Domains for 3wxo:
      1. 2003180Domain d3wxoa1: 3wxo A:11-429 [268107]
        automated match to d3wnua1
        complexed with hem, na, niz
      2. 2003181Domain d3wxoa2: 3wxo A:430-720 [268108]
        automated match to d3wnua2
        complexed with hem, na, niz
    3. Domains for 3x16:
      1. 2003184Domain d3x16a1: 3x16 A:11-426 [268124]
        automated match to d3ut2a1
        complexed with heb, na; mutant
      2. 2003185Domain d3x16a2: 3x16 A:427-720 [268125]
        automated match to d3ut2a2
        complexed with heb, na; mutant
  9. 2003186Trachycarpus fortunei [TaxId:14027] [273214] (1 PDB entry)
  10. 2003189Trametes cervina [TaxId:295351] [189654] (1 PDB entry)
  11. 2285750Panicum virgatum [TaxId:38727] [329051] (1 PDB entry)

More info for Protein automated matches from a.93.1.0: automated matches

Timeline for Protein automated matches from a.93.1.0: automated matches: