Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2002464Fold a.93: Heme-dependent peroxidases [48112] (1 superfamily)
    multihelical; consists of two all-alpha domains
  4. 2002465Superfamily a.93.1: Heme-dependent peroxidases [48113] (4 families) (S)
  5. 2003088Family a.93.1.0: automated matches [191605] (1 protein)
    not a true family
  6. 2003089Protein automated matches [191104] (11 species)
    not a true protein

Species:

  1. 2003090Haloarcula marismortui [TaxId:272569] [226809] (7 PDB entries)
    1. Domains for 3uw8:
      1. 2003111Domain d3uw8a1: 3uw8 A:18-423 [217545]
        Other proteins in same PDB: d3uw8b1, d3uw8b2
        automated match to d1ub2a1
        complexed with hem
      2. 2003112Domain d3uw8a2: 3uw8 A:424-731 [217546]
        Other proteins in same PDB: d3uw8b1, d3uw8b2
        automated match to d1ub2a2
        complexed with hem
    2. Domains for 3vlh:
      1. 2003099Domain d3vlha1: 3vlh A:18-423 [217914]
        automated match to d1ub2a1
        complexed with hem
      2. 2003100Domain d3vlha2: 3vlh A:424-731 [217915]
        automated match to d1ub2a2
        complexed with hem
      3. 2003101Domain d3vlhb1: 3vlh B:18-423 [217916]
        automated match to d1ub2a1
        complexed with hem
      4. 2003102Domain d3vlhb2: 3vlh B:424-731 [217917]
        automated match to d1ub2a2
        complexed with hem
    3. Domains for 3vli:
      1. 2003095Domain d3vlia1: 3vli A:18-423 [217918]
        automated match to d1ub2a1
        complexed with cyn, hem
      2. 2003096Domain d3vlia2: 3vli A:424-731 [217919]
        automated match to d1ub2a2
        complexed with cyn, hem
      3. 2003097Domain d3vlib1: 3vli B:18-423 [217920]
        automated match to d1ub2a1
        complexed with cyn, hem
      4. 2003098Domain d3vlib2: 3vli B:424-731 [217921]
        automated match to d1ub2a2
        complexed with cyn, hem
    4. Domains for 3vlj:
      1. 2003091Domain d3vlja1: 3vlj A:18-423 [217922]
        automated match to d1ub2a1
        complexed with cyn, ddj, hem
      2. 2003092Domain d3vlja2: 3vlj A:424-731 [217923]
        automated match to d1ub2a2
        complexed with cyn, ddj, hem
      3. 2003093Domain d3vljb1: 3vlj B:18-423 [217924]
        automated match to d1ub2a1
        complexed with cyn, ddj, hem
      4. 2003094Domain d3vljb2: 3vlj B:424-731 [217925]
        automated match to d1ub2a2
        complexed with cyn, ddj, hem
    5. Domains for 3vlk:
      1. 2003103Domain d3vlka1: 3vlk A:18-423 [217926]
        automated match to d1ub2a1
        complexed with hem
      2. 2003104Domain d3vlka2: 3vlk A:424-731 [217927]
        automated match to d1ub2a2
        complexed with hem
      3. 2003105Domain d3vlkb1: 3vlk B:18-423 [217928]
        automated match to d1ub2a1
        complexed with hem
      4. 2003106Domain d3vlkb2: 3vlk B:424-731 [217929]
        automated match to d1ub2a2
        complexed with hem
    6. Domains for 3vll:
      1. 2003107Domain d3vlla1: 3vll A:18-423 [217930]
        automated match to d1ub2a1
        complexed with hem, sha
      2. 2003108Domain d3vlla2: 3vll A:424-731 [217931]
        automated match to d1ub2a2
        complexed with hem, sha
      3. 2003109Domain d3vllb1: 3vll B:18-423 [217932]
        automated match to d1ub2a1
        complexed with hem, sha
      4. 2003110Domain d3vllb2: 3vll B:424-731 [217933]
        automated match to d1ub2a2
        complexed with hem, sha
    7. Domains for 3vlm:
      1. 2003113Domain d3vlma1: 3vlm A:29-423 [217934]
        automated match to d1ub2a1
        complexed with hem
      2. 2003114Domain d3vlma2: 3vlm A:424-728 [217935]
        automated match to d1ub2a2
        complexed with hem
      3. 2003115Domain d3vlmb1: 3vlm B:29-423 [217936]
        automated match to d1ub2a1
        complexed with hem
      4. 2003116Domain d3vlmb2: 3vlm B:424-728 [217937]
        automated match to d1ub2a2
        complexed with hem
  2. 2003117Magnaporthe oryzae [TaxId:242507] [226424] (5 PDB entries)
    1. Domains for 3ut2:
      1. 2003118Domain d3ut2a1: 3ut2 A:50-475 [217508]
        automated match to d1ub2a1
        complexed with hem
      2. 2003119Domain d3ut2a2: 3ut2 A:476-784 [217509]
        automated match to d1ub2a2
        complexed with hem
      3. 2003120Domain d3ut2b1: 3ut2 B:51-475 [217510]
        automated match to d1ub2a1
        complexed with hem
      4. 2003121Domain d3ut2b2: 3ut2 B:476-782 [217511]
        automated match to d1ub2a2
        complexed with hem
    2. Domains for 5cjh:
      1. 2003122Domain d5cjha1: 5cjh A:51-475 [276540]
        automated match to d3ut2a1
        complexed with 522, oh
      2. 2003123Domain d5cjha2: 5cjh A:476-784 [276541]
        automated match to d3ut2a2
        complexed with 522, oh
      3. 2003124Domain d5cjhb1: 5cjh B:51-475 [276538]
        automated match to d3ut2a1
        complexed with 522, oh
      4. 2003125Domain d5cjhb2: 5cjh B:476-783 [276539]
        automated match to d3ut2a2
        complexed with 522, oh
    3. Domains for 5jhx:
      1. 2275502Domain d5jhxb1: 5jhx B:50-475 [318803]
        automated match to d3ut2a1
        complexed with flc, hem
      2. 2275503Domain d5jhxb2: 5jhx B:476-783 [318804]
        automated match to d3ut2a2
        complexed with flc, hem
      3. 2275536Domain d5jhxa1: 5jhx A:50-475 [318837]
        automated match to d3ut2a1
        complexed with flc, hem
      4. 2275537Domain d5jhxa2: 5jhx A:476-784 [318838]
        automated match to d3ut2a2
        complexed with flc, hem
    4. Domains for 5jhy:
      1. 2275533Domain d5jhyb1: 5jhy B:51-475 [318834]
        automated match to d3ut2a1
        complexed with hem
      2. 2275534Domain d5jhyb2: 5jhy B:476-784 [318835]
        automated match to d3ut2a2
        complexed with hem
      3. 2275567Domain d5jhya1: 5jhy A:50-475 [318868]
        automated match to d3ut2a1
        complexed with hem
      4. 2275568Domain d5jhya2: 5jhy A:476-784 [318869]
        automated match to d3ut2a2
        complexed with hem
    5. Domains for 5jhz:
      1. 2275540Domain d5jhza1: 5jhz A:50-475 [318841]
        automated match to d3ut2a1
        complexed with hem
      2. 2275541Domain d5jhza2: 5jhz A:476-784 [318842]
        automated match to d3ut2a2
        complexed with hem
      3. 2275550Domain d5jhzb1: 5jhz B:50-475 [318851]
        automated match to d3ut2a1
        complexed with hem
      4. 2275552Domain d5jhzb2: 5jhz B:476-784 [318853]
        automated match to d3ut2a2
        complexed with hem
  3. 2003126Mycobacterium tuberculosis [TaxId:1773] [254876] (2 PDB entries)
    1. Domains for 2cca:
      1. 2003131Domain d2ccaa1: 2cca A:26-432 [130222]
        automated match to d4c50a1
        complexed with hem; mutant
      2. 2003132Domain d2ccaa2: 2cca A:433-740 [130223]
        automated match to d4c50a2
        complexed with hem; mutant
      3. 2003133Domain d2ccab1: 2cca B:26-432 [130224]
        automated match to d4c50a1
        complexed with hem; mutant
      4. 2003134Domain d2ccab2: 2cca B:433-740 [130225]
        automated match to d4c50a2
        complexed with hem; mutant
    2. Domains for 2ccd:
      1. 2003127Domain d2ccda1: 2ccd A:26-432 [130228]
        automated match to d4c50a1
        complexed with hem; mutant
      2. 2003128Domain d2ccda2: 2ccd A:433-740 [130229]
        automated match to d4c50a2
        complexed with hem; mutant
      3. 2003129Domain d2ccdb1: 2ccd B:26-432 [130230]
        automated match to d4c50a1
        complexed with hem; mutant
      4. 2003130Domain d2ccdb2: 2ccd B:433-740 [130231]
        automated match to d4c50a2
        complexed with hem; mutant
  4. 2003135Mycobacterium tuberculosis [TaxId:83332] [228914] (2 PDB entries)
    1. Domains for 4c50:
      1. 2003140Domain d4c50a1: 4c50 A:25-432 [228915]
        automated match to d3ut2a1
        complexed with act, glc, hem; mutant
      2. 2003141Domain d4c50a2: 4c50 A:433-740 [228916]
        automated match to d3ut2a2
        complexed with act, glc, hem; mutant
      3. 2003142Domain d4c50b1: 4c50 B:25-432 [234290]
        automated match to d4c50a1
        complexed with act, glc, hem; mutant
      4. 2003143Domain d4c50b2: 4c50 B:433-740 [234291]
        automated match to d4c50a2
        complexed with act, glc, hem; mutant
    2. Domains for 4c51:
      1. 2003136Domain d4c51a1: 4c51 A:24-432 [251339]
        automated match to d4c50a1
        complexed with glc, hem; mutant
      2. 2003137Domain d4c51a2: 4c51 A:433-740 [251340]
        automated match to d4c50a2
        complexed with glc, hem; mutant
      3. 2003138Domain d4c51b1: 4c51 B:24-432 [251341]
        automated match to d4c50a1
        complexed with glc, hem; mutant
      4. 2003139Domain d4c51b2: 4c51 B:433-740 [251342]
        automated match to d4c50a2
        complexed with glc, hem; mutant
  5. 2003144Oyster mushroom (Pleurotus ostreatus) [TaxId:5322] [235966] (11 PDB entries)
    1. Domain for 4blk:
    2. Domain for 4bll:
    3. Domain for 4bln:
    4. Domain for 4blx:
    5. Domain for 4bly:
    6. Domains for 4blz:
      1. 2003154Domain d4blza_: 4blz A: [235973]
        automated match to d2vkaa_
        complexed with ca, hem
      2. 2003155Domain d4blzb_: 4blz B: [240029]
        automated match to d4blka_
        complexed with ca, hem
    7. Domain for 4bm0:
    8. Domains for 4bm1:
      1. 2003147Domain d4bm1a_: 4bm1 A: [235967]
        automated match to d3q3ua_
        complexed with ca, cit, hem, so4
      2. 2003148Domain d4bm1b_: 4bm1 B: [235969]
        automated match to d3q3ua_
        complexed with ca, cit, hem, so4
    9. Domain for 4bm2:
    10. Domain for 4bm3:
    11. Domain for 4bm4:
  6. 2003158Pleurotus eryngii [TaxId:5323] [226503] (19 PDB entries)
    1. Domain for 2boq:
    2. Domain for 2vka:
    3. Domain for 2w23:
    4. Domains for 3fjw:
      1. 2003173Domain d3fjwa_: 3fjw A: [232165]
        automated match to d4fcna_
        complexed with ca, hem, man, mn, nag
      2. 2003174Domain d3fjwb_: 3fjw B: [232166]
        automated match to d4fcna_
        complexed with ca, hem, man, mn, nag
    5. Domain for 3fkg:
    6. Domain for 3fm1:
    7. Domain for 3fm4:
    8. Domain for 3fm6:
    9. Domain for 3fmu:
    10. Domain for 4fcn:
    11. Domain for 4fcs:
    12. Domain for 4fdq:
    13. Domain for 4fef:
    14. Domain for 4g05:
    15. Domain for 5abn:
    16. Domain for 5abo:
    17. Domain for 5abq:
    18. Domains for 5fnb:
      1. 2276238Domain d5fnba_: 5fnb A: [319539]
        automated match to d3fjwa_
        complexed with ca, hem, so4; mutant
      2. 2276357Domain d5fnbb_: 5fnb B: [319658]
        automated match to d3fjwa_
        complexed with ca, hem, so4; mutant
    19. Domain for 5fne:
  7. 2003177Roystonea regia [TaxId:145709] [189129] (1 PDB entry)
  8. 2003179Synechococcus elongatus [TaxId:1140] [237745] (3 PDB entries)
    1. Domains for 3wnu:
      1. 2003182Domain d3wnua1: 3wnu A:11-429 [237746]
        automated match to d3n3pb1
        complexed with heb, na
      2. 2003183Domain d3wnua2: 3wnu A:430-720 [237747]
        automated match to d3n3qb2
        complexed with heb, na
    2. Domains for 3wxo:
      1. 2003180Domain d3wxoa1: 3wxo A:11-429 [268107]
        automated match to d3wnua1
        complexed with hem, na, niz
      2. 2003181Domain d3wxoa2: 3wxo A:430-720 [268108]
        automated match to d3wnua2
        complexed with hem, na, niz
    3. Domains for 3x16:
      1. 2003184Domain d3x16a1: 3x16 A:11-426 [268124]
        automated match to d3ut2a1
        complexed with heb, na; mutant
      2. 2003185Domain d3x16a2: 3x16 A:427-720 [268125]
        automated match to d3ut2a2
        complexed with heb, na; mutant
  9. 2003186Trachycarpus fortunei [TaxId:14027] [273214] (1 PDB entry)
  10. 2003189Trametes cervina [TaxId:295351] [189654] (1 PDB entry)
  11. 2285750Panicum virgatum [TaxId:38727] [329051] (1 PDB entry)

More info for Protein automated matches from a.93.1.0: automated matches

Timeline for Protein automated matches from a.93.1.0: automated matches: