SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1985062Fold a.6: Putative DNA-binding domain [46954] (1 superfamily)
    core: 3 helices; architecture is similar to that of the "winged helix" fold but topology is different
  4. 1985063Superfamily a.6.1: Putative DNA-binding domain [46955] (8 families) (S)
  5. 1985178Family a.6.1.0: automated matches [191604] (1 protein)
    not a true family
  6. 1985179Protein automated matches [191102] (5 species)
    not a true protein

Species:

  1. 1985180Bacillus megaterium [TaxId:1404] [275234] (2 PDB entries)
    1. Domains for 4ua1:
      1. 1985181Domain d4ua1a_: 4ua1 A: [275238]
        automated match to d1q05b_
        protein/DNA complex; complexed with hg
      2. 1985182Domain d4ua1b_: 4ua1 B: [275239]
        automated match to d1q05b_
        protein/DNA complex; complexed with hg
    2. Domains for 4ua2:
      1. 1985183Domain d4ua2a_: 4ua2 A: [275235]
        automated match to d1q05b_
      2. 1985184Domain d4ua2b_: 4ua2 B: [275236]
        automated match to d1q05b_
      3. 1985185Domain d4ua2c_: 4ua2 C: [275242]
        automated match to d1q05b_
      4. 1985186Domain d4ua2d_: 4ua2 D: [275237]
        automated match to d1q05b_
      5. 1985187Domain d4ua2e_: 4ua2 E: [275241]
        automated match to d1q05b_
      6. 1985188Domain d4ua2f_: 4ua2 F: [275240]
        automated match to d1q05b_
      7. 1985189Domain d4ua2g_: 4ua2 G: [275243]
        automated match to d1q05b_
      8. 1985190Domain d4ua2h_: 4ua2 H: [275244]
        automated match to d1q05b_
  2. 1985191Escherichia coli K-12 [TaxId:83333] [255728] (1 PDB entry)
  3. 1985193Streptomyces lividans [TaxId:1916] [189122] (1 PDB entry)
  4. 2278852Pseudomonas aeruginosa [TaxId:287] [322153] (1 PDB entry)
  5. 2284260Cupriavidus metallidurans [TaxId:266264] [327561] (1 PDB entry)

More info for Protein automated matches from a.6.1.0: automated matches

Timeline for Protein automated matches from a.6.1.0: automated matches: