SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2172288Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 2173863Superfamily d.58.6: Nucleoside diphosphate kinase, NDK [54919] (2 families) (S)
  5. 2174362Family d.58.6.0: automated matches [191597] (1 protein)
    not a true family
  6. 2174363Protein automated matches [191087] (11 species)
    not a true protein

Species:

  1. 2174364Acinetobacter baumannii [TaxId:509170] [273929] (2 PDB entries)
    1. Domains for 4s0m:
      1. 2174366Domain d4s0ma_: 4s0m A: [309635]
        automated match to d4w98a_
        complexed with mg
      2. 2174367Domain d4s0mb_: 4s0m B: [309636]
        automated match to d4w98a_
        complexed with mg
      3. 2174368Domain d4s0mc_: 4s0m C: [309637]
        automated match to d4w98a_
        complexed with mg
      4. 2174369Domain d4s0md_: 4s0m D: [309638]
        automated match to d4w98a_
        complexed with mg
      5. 2174370Domain d4s0mf_: 4s0m F: [309639]
        automated match to d4w98a_
        complexed with mg
      6. 2174371Domain d4s0mg_: 4s0m G: [309640]
        automated match to d4w98a_
        complexed with mg
      7. 2174372Domain d4s0mh_: 4s0m H: [309641]
        automated match to d4w98a_
        complexed with mg
      8. 2174373Domain d4s0mi_: 4s0m I: [309642]
        automated match to d4w98a_
        complexed with mg
    2. Domain for 4w98:
  2. 2174374Aquifex aeolicus [TaxId:63363] [193801] (5 PDB entries)
    1. Domain for 3zto:
    2. Domains for 3ztp:
      1. 2174375Domain d3ztpa_: 3ztp A: [218482]
        automated match to d3ztoa_
        complexed with gol, so4
      2. 2174376Domain d3ztpc_: 3ztp C: [218483]
        automated match to d3ztoa_
        complexed with gol, so4
    3. Domains for 3ztq:
      1. 2174378Domain d3ztqa_: 3ztq A: [218484]
        automated match to d3ztoa_
      2. 2174379Domain d3ztqb_: 3ztq B: [218485]
        automated match to d3ztoa_
      3. 2174380Domain d3ztqc_: 3ztq C: [218486]
        automated match to d3ztoa_
      4. 2174381Domain d3ztqd_: 3ztq D: [218487]
        automated match to d3ztoa_
      5. 2174382Domain d3ztqe_: 3ztq E: [218488]
        automated match to d3ztoa_
      6. 2174383Domain d3ztqf_: 3ztq F: [218489]
        automated match to d3ztoa_
      7. 2174384Domain d3ztqg_: 3ztq G: [218490]
        automated match to d3ztoa_
      8. 2174385Domain d3ztqh_: 3ztq H: [218491]
        automated match to d3ztoa_
    4. Domains for 3ztr:
      1. 2174386Domain d3ztra_: 3ztr A: [218492]
        automated match to d3ztoa_
      2. 2174387Domain d3ztrb_: 3ztr B: [218493]
        automated match to d3ztoa_
      3. 2174388Domain d3ztrc_: 3ztr C: [218494]
        automated match to d3ztoa_
      4. 2174389Domain d3ztrd_: 3ztr D: [218495]
        automated match to d3ztoa_
      5. 2174390Domain d3ztre_: 3ztr E: [218496]
        automated match to d3ztoa_
      6. 2174391Domain d3ztrf_: 3ztr F: [218497]
        automated match to d3ztoa_
      7. 2174392Domain d3ztrg_: 3ztr G: [218498]
        automated match to d3ztoa_
      8. 2174393Domain d3ztrh_: 3ztr H: [218499]
        automated match to d3ztoa_
      9. 2174394Domain d3ztri_: 3ztr I: [218500]
        automated match to d3ztoa_
      10. 2174395Domain d3ztrj_: 3ztr J: [218501]
        automated match to d3ztoa_
      11. 2174396Domain d3ztrk_: 3ztr K: [218502]
        automated match to d3ztoa_
      12. 2174397Domain d3ztrl_: 3ztr L: [218503]
        automated match to d3ztoa_
    5. Domains for 3zts:
      1. 2174398Domain d3ztsa_: 3zts A: [218504]
        automated match to d3ztoa_
      2. 2174399Domain d3ztsb_: 3zts B: [218505]
        automated match to d3ztoa_
      3. 2174400Domain d3ztsc_: 3zts C: [218506]
        automated match to d3ztoa_
      4. 2174401Domain d3ztsd_: 3zts D: [218507]
        automated match to d3ztoa_
      5. 2174402Domain d3ztse_: 3zts E: [218508]
        automated match to d3ztoa_
      6. 2174403Domain d3ztsf_: 3zts F: [218509]
        automated match to d3ztoa_
      7. 2174404Domain d3ztsg_: 3zts G: [218510]
        automated match to d3ztoa_
      8. 2174405Domain d3ztsh_: 3zts H: [218511]
        automated match to d3ztoa_
      9. 2174406Domain d3ztsi_: 3zts I: [218512]
        automated match to d3ztoa_
      10. 2174407Domain d3ztsj_: 3zts J: [218513]
        automated match to d3ztoa_
      11. 2174408Domain d3ztsk_: 3zts K: [218514]
        automated match to d3ztoa_
      12. 2174409Domain d3ztsl_: 3zts L: [218515]
        automated match to d3ztoa_
  3. 2174410Babesia bovis [TaxId:484906] [189049] (1 PDB entry)
  4. 2174414Fungus (Encephalitozoon cuniculi) [TaxId:6035] [189331] (1 PDB entry)
  5. 2174417Lyme disease spirochete (Borrelia burgdorferi) [TaxId:139] [226296] (2 PDB entries)
    1. Domains for 4di6:
      1. 2174424Domain d4di6a1: 4di6 A:3-169 [219773]
        Other proteins in same PDB: d4di6a2, d4di6b2, d4di6d2, d4di6e2, d4di6f2
        automated match to d1xqia1
      2. 2174425Domain d4di6b1: 4di6 B:3-169 [219774]
        Other proteins in same PDB: d4di6a2, d4di6b2, d4di6d2, d4di6e2, d4di6f2
        automated match to d1xqia1
      3. 2174426Domain d4di6c_: 4di6 C: [219775]
        Other proteins in same PDB: d4di6a2, d4di6b2, d4di6d2, d4di6e2, d4di6f2
        automated match to d1xqia1
      4. 2174427Domain d4di6d1: 4di6 D:3-169 [219776]
        Other proteins in same PDB: d4di6a2, d4di6b2, d4di6d2, d4di6e2, d4di6f2
        automated match to d1xqia1
      5. 2174428Domain d4di6e1: 4di6 E:3-169 [219777]
        Other proteins in same PDB: d4di6a2, d4di6b2, d4di6d2, d4di6e2, d4di6f2
        automated match to d1xqia1
      6. 2174429Domain d4di6f1: 4di6 F:3-169 [219778]
        Other proteins in same PDB: d4di6a2, d4di6b2, d4di6d2, d4di6e2, d4di6f2
        automated match to d1xqia1
    2. Domains for 4dz6:
      1. 2174418Domain d4dz6a1: 4dz6 A:3-169 [234345]
        Other proteins in same PDB: d4dz6a2, d4dz6b2, d4dz6c2, d4dz6d2, d4dz6e2, d4dz6f2
        automated match to d4di6d_
        complexed with adp, edo, vn4, vo4
      2. 2174419Domain d4dz6b1: 4dz6 B:3-169 [220110]
        Other proteins in same PDB: d4dz6a2, d4dz6b2, d4dz6c2, d4dz6d2, d4dz6e2, d4dz6f2
        automated match to d1xqia1
        complexed with adp, edo, vn4, vo4
      3. 2174420Domain d4dz6c1: 4dz6 C:3-169 [220111]
        Other proteins in same PDB: d4dz6a2, d4dz6b2, d4dz6c2, d4dz6d2, d4dz6e2, d4dz6f2
        automated match to d1xqia1
        complexed with adp, edo, vn4, vo4
      4. 2174421Domain d4dz6d1: 4dz6 D:3-169 [220112]
        Other proteins in same PDB: d4dz6a2, d4dz6b2, d4dz6c2, d4dz6d2, d4dz6e2, d4dz6f2
        automated match to d1xqia1
        complexed with adp, edo, vn4, vo4
      5. 2174422Domain d4dz6e1: 4dz6 E:3-169 [220113]
        Other proteins in same PDB: d4dz6a2, d4dz6b2, d4dz6c2, d4dz6d2, d4dz6e2, d4dz6f2
        automated match to d1xqia1
        complexed with adp, edo, vn4, vo4
      6. 2174423Domain d4dz6f1: 4dz6 F:3-169 [220114]
        Other proteins in same PDB: d4dz6a2, d4dz6b2, d4dz6c2, d4dz6d2, d4dz6e2, d4dz6f2
        automated match to d1xqia1
        complexed with adp, edo, vn4, vo4
  6. 2174430Maize (Zea mays) [TaxId:4577] [271285] (1 PDB entry)
  7. 2174443Mycobacterium tuberculosis [TaxId:1773] [234075] (3 PDB entries)
    1. Domain for 4anc:
    2. Domains for 4and:
      1. 2174451Domain d4anda_: 4and A: [234077]
        automated match to d3fc9a_
        mutant
      2. 2174452Domain d4andb_: 4and B: [239973]
        automated match to d4anca_
        mutant
    3. Domains for 4ane:
      1. 2174444Domain d4anea_: 4ane A: [234079]
        automated match to d3fc9a_
        complexed with cit; mutant
      2. 2174445Domain d4aneb_: 4ane B: [234078]
        automated match to d3fc9a_
        complexed with cit; mutant
      3. 2174446Domain d4anec_: 4ane C: [234081]
        automated match to d3fc9a_
        complexed with cit; mutant
      4. 2174447Domain d4aned_: 4ane D: [234080]
        automated match to d3fc9a_
        complexed with cit; mutant
      5. 2174448Domain d4anee_: 4ane E: [234082]
        automated match to d3fc9a_
        complexed with cit; mutant
      6. 2174449Domain d4anef_: 4ane F: [234083]
        automated match to d3fc9a_
        complexed with cit; mutant
  8. 2174453Pacific white shrimp (Litopenaeus vannamei) [TaxId:6689] [259554] (3 PDB entries)
    1. Domains for 4uof:
      1. 2174457Domain d4uofa_: 4uof A: [267454]
        automated match to d4uoha_
        complexed with dat, mg
      2. 2174458Domain d4uofb_: 4uof B: [267455]
        automated match to d4uoha_
        complexed with dat, mg
      3. 2174459Domain d4uofc_: 4uof C: [267456]
        automated match to d4uoha_
        complexed with dat, mg
    2. Domains for 4uog:
      1. 2174460Domain d4uoga_: 4uog A: [267457]
        automated match to d4uoha_
        complexed with mg, yyy
      2. 2174461Domain d4uogb_: 4uog B: [267458]
        automated match to d4uoha_
        complexed with mg, yyy
      3. 2174462Domain d4uogc_: 4uog C: [267459]
        automated match to d4uoha_
        complexed with mg, yyy
    3. Domains for 4uoh:
      1. 2174454Domain d4uoha_: 4uoh A: [259555]
        automated match to d4f36e_
        complexed with adp, mg
      2. 2174455Domain d4uohb_: 4uoh B: [263987]
        automated match to d4uoha_
        complexed with adp, mg
      3. 2174456Domain d4uohc_: 4uoh C: [259728]
        automated match to d4f36e_
        complexed with adp, mg
  9. 2174463Trypanosoma brucei [TaxId:999953] [195043] (4 PDB entries)
    1. Domains for 4f36:
      1. 2174473Domain d4f36a_: 4f36 A: [195366]
        Other proteins in same PDB: d4f36e2
        automated match to d3prvb_
        complexed with scn
      2. 2174474Domain d4f36b_: 4f36 B: [201984]
        Other proteins in same PDB: d4f36e2
        automated match to d4f4ac_
        complexed with scn
      3. 2174475Domain d4f36c_: 4f36 C: [201985]
        Other proteins in same PDB: d4f36e2
        automated match to d4f36e_
        complexed with scn
      4. 2174476Domain d4f36d_: 4f36 D: [201986]
        Other proteins in same PDB: d4f36e2
        automated match to d4f4ac_
        complexed with scn
      5. 2174477Domain d4f36e1: 4f36 E:1-153 [195365]
        Other proteins in same PDB: d4f36e2
        automated match to d3prvb_
        complexed with scn
      6. 2174478Domain d4f36f_: 4f36 F: [201987]
        Other proteins in same PDB: d4f36e2
        automated match to d4f4aa_
        complexed with scn
    2. Domains for 4f4a:
      1. 2174470Domain d4f4aa_: 4f4a A: [195275]
        automated match to d3prvb_
        complexed with mg, udp
      2. 2174471Domain d4f4ab_: 4f4a B: [195274]
        automated match to d3prvb_
        complexed with mg, udp
      3. 2174472Domain d4f4ac_: 4f4a C: [195273]
        automated match to d3prvb_
        complexed with mg, udp
    3. Domains for 4fkx:
      1. 2174464Domain d4fkxa_: 4fkx A: [221261]
        automated match to d4fkyc_
        complexed with cdp, mg, mpd
      2. 2174465Domain d4fkxb_: 4fkx B: [221262]
        automated match to d4fkyc_
        complexed with cdp, mg, mpd
      3. 2174466Domain d4fkxc_: 4fkx C: [221263]
        automated match to d4fkyc_
        complexed with cdp, mg, mpd
    4. Domains for 4fky:
      1. 2174467Domain d4fkya_: 4fky A: [202042]
        automated match to d4fkyc_
        complexed with gdp, mg, mpd
      2. 2174468Domain d4fkyb_: 4fky B: [202043]
        automated match to d4fkyc_
        complexed with gdp, mg, mpd
      3. 2174469Domain d4fkyc_: 4fky C: [195044]
        automated match to d3prvb_
        complexed with gdp, mg, mpd
  10. 2174479Trypanosoma cruzi [TaxId:5693] [189957] (1 PDB entry)
  11. 2285735Naegleria fowleri [TaxId:5763] [329036] (1 PDB entry)

More info for Protein automated matches from d.58.6.0: automated matches

Timeline for Protein automated matches from d.58.6.0: automated matches: