SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1986009Fold a.11: Acyl-CoA binding protein-like [47026] (2 superfamilies)
    core: 3 helices; bundle, closed, left-handed twist; up-and-down
  4. 1986010Superfamily a.11.1: Acyl-CoA binding protein [47027] (2 families) (S)
  5. 1986031Family a.11.1.0: automated matches [191596] (1 protein)
    not a true family
  6. 1986032Protein automated matches [191086] (5 species)
    not a true protein

Species:

  1. 1986033Babesia bovis [TaxId:5865] [255422] (1 PDB entry)
  2. 1986035Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [254899] (1 PDB entry)
  3. 1986037Human (Homo sapiens) [TaxId:9606] [189032] (2 PDB entries)
    1. Domains for 2wh5:
      1. 1986040Domain d2wh5a_: 2wh5 A: [169341]
        automated match to d1acaa_
        complexed with coa, st9, ste
      2. 1986041Domain d2wh5b_: 2wh5 B: [169342]
        automated match to d1acaa_
        complexed with coa, st9, ste
      3. 1986042Domain d2wh5c_: 2wh5 C: [169343]
        automated match to d1acaa_
        complexed with coa, st9, ste
      4. 1986043Domain d2wh5d_: 2wh5 D: [169344]
        automated match to d1acaa_
        complexed with coa, st9, ste
      5. 1986044Domain d2wh5e_: 2wh5 E: [169345]
        automated match to d1acaa_
        complexed with coa, st9, ste
      6. 1986045Domain d2wh5f_: 2wh5 F: [169346]
        automated match to d1acaa_
        complexed with coa, st9, ste
    2. Domains for 3flv:
      1. 1986038Domain d3flva1: 3flv A:5-94 [210009]
        Other proteins in same PDB: d3flva2, d3flvb2
        automated match to d2wh5a_
        complexed with coa, ste, unx
      2. 1986039Domain d3flvb1: 3flv B:5-91 [210010]
        Other proteins in same PDB: d3flva2, d3flvb2
        automated match to d2wh5a_
        complexed with coa, ste, unx
  4. 1986046Moniliophthora perniciosa [TaxId:153609] [189115] (1 PDB entry)
  5. 2287456Leishmania major [TaxId:5664] [330757] (1 PDB entry)

More info for Protein automated matches from a.11.1.0: automated matches

Timeline for Protein automated matches from a.11.1.0: automated matches: