SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2217451Class e: Multi-domain proteins (alpha and beta) [56572] (69 folds)
  3. 2222543Fold e.23: Acetyl-CoA synthetase-like [56800] (1 superfamily)
    4 domains: (1&2) duplication: share the same alpha/beta fold; (3) beta-barrel; (4) alpha+beta
  4. 2222544Superfamily e.23.1: Acetyl-CoA synthetase-like [56801] (2 families) (S)
  5. 2222620Family e.23.1.0: automated matches [191594] (1 protein)
    not a true family
  6. 2222621Protein automated matches [191083] (22 species)
    not a true protein

Species:

  1. 2222622Acinetobacter baumannii [TaxId:557601] [189484] (5 PDB entries)
    1. Domains for 3o82:
      1. 2222631Domain d3o82a_: 3o82 A: [182863]
        automated match to d1md9a_
        complexed with ca, hp8
      2. 2222632Domain d3o82b_: 3o82 B: [182864]
        automated match to d1md9a_
        complexed with ca, hp8
    2. Domains for 3o83:
      1. 2222623Domain d3o83a_: 3o83 A: [182865]
        automated match to d1md9a_
        complexed with ca, ixn, mpd, mrd
      2. 2222624Domain d3o83b_: 3o83 B: [182866]
        automated match to d1md9a_
        complexed with ca, ixn, mpd, mrd
    3. Domains for 3o84:
      1. 2222627Domain d3o84a_: 3o84 A: [182867]
        automated match to d1md9a_
        complexed with ca, htj, mpd, mrd, pge
      2. 2222628Domain d3o84b_: 3o84 B: [182868]
        automated match to d1md9a_
        complexed with ca, htj, mpd, mrd, pge
    4. Domains for 3u16:
      1. 2222625Domain d3u16a_: 3u16 A: [217139]
        automated match to d3o83a_
        complexed with ca, h89, mpd, mrd
      2. 2222626Domain d3u16b_: 3u16 B: [217140]
        automated match to d3o83b_
        complexed with ca, h89, mpd, mrd
    5. Domains for 3u17:
      1. 2222629Domain d3u17a_: 3u17 A: [217141]
        automated match to d3o83a_
        complexed with ca, h90, mpd, mrd
      2. 2222630Domain d3u17b_: 3u17 B: [217142]
        automated match to d3o83b_
        complexed with ca, h90, mpd, mrd
  2. 2222633Bacillus cereus [TaxId:226900] [267827] (4 PDB entries)
    1. Domain for 3dhv:
    2. Domain for 3fcc:
    3. Domain for 3fce:
    4. Domain for 4pzp:
  3. 2222638Bacillus subtilis [TaxId:1423] [311280] (2 PDB entries)
    1. Domain for 3e7w:
    2. Domain for 3e7x:
  4. 2222641Bacillus subtilis [TaxId:224308] [276264] (5 PDB entries)
    1. Domains for 5buq:
      1. 2222642Domain d5buqa_: 5buq A: [301871]
        automated match to d5buqb_
        complexed with act, ca
      2. 2222643Domain d5buqb_: 5buq B: [276266]
        automated match to d3fcca_
        complexed with act, ca
    2. Domain for 5bur:
    3. Domain for 5bus:
    4. Domains for 5x8f:
      1. 2291947Domain d5x8fc_: 5x8f C: [335248]
        automated match to d5buqb_
        complexed with amp, ca, mg, na, peg, s0n; mutant
      2. 2291950Domain d5x8fa_: 5x8f A: [335251]
        automated match to d5buqb_
        complexed with amp, ca, mg, na, peg, s0n; mutant
      3. 2291974Domain d5x8fb_: 5x8f B: [335275]
        automated match to d5buqb_
        complexed with amp, ca, mg, na, peg, s0n; mutant
      4. 2291987Domain d5x8fd_: 5x8f D: [335288]
        automated match to d5buqb_
        complexed with amp, ca, mg, na, peg, s0n; mutant
    5. Domains for 5x8g:
      1. 2291949Domain d5x8gc_: 5x8g C: [335250]
        automated match to d5buqb_
        complexed with ca, mg, na, peg, s0n; mutant
      2. 2291957Domain d5x8gb_: 5x8g B: [335258]
        automated match to d5buqb_
        complexed with ca, mg, na, peg, s0n; mutant
      3. 2291989Domain d5x8ga_: 5x8g A: [335290]
        automated match to d5buqb_
        complexed with ca, mg, na, peg, s0n; mutant
      4. 2292004Domain d5x8gd_: 5x8g D: [335305]
        automated match to d5buqb_
        complexed with ca, mg, na, peg, s0n; mutant
  5. 2222646Burkholderia xenovorans [TaxId:266265] [225346] (1 PDB entry)
  6. 2222649Human (Homo sapiens) [TaxId:9606] [255628] (8 PDB entries)
    1. Domains for 2vze:
      1. 2222657Domain d2vzea_: 2vze A: [243959]
        automated match to d4eatb_
        complexed with amp, mg; mutant
      2. 2222658Domain d2vzeb_: 2vze B: [243960]
        automated match to d4eatb_
        complexed with amp, mg; mutant
      3. 2222659Domain d2vzec_: 2vze C: [243961]
        automated match to d4eatb_
        complexed with amp, mg; mutant
    2. Domains for 2wd9:
      1. 2222662Domain d2wd9a_: 2wd9 A: [244116]
        automated match to d4eata_
        complexed with ibp, mg; mutant
      2. 2222663Domain d2wd9b_: 2wd9 B: [244117]
        automated match to d4eata_
        complexed with ibp, mg; mutant
      3. 2222664Domain d2wd9c_: 2wd9 C: [244118]
        automated match to d4eata_
        complexed with ibp, mg; mutant
    3. Domain for 3b7w:
    4. Domain for 3c5e:
    5. Domain for 3day:
    6. Domains for 3eq6:
      1. 2222660Domain d3eq6a_: 3eq6 A: [245897]
        automated match to d4eatb_
        complexed with amp, bco; mutant
      2. 2222661Domain d3eq6b_: 3eq6 B: [245898]
        automated match to d4eatb_
        complexed with amp, bco; mutant
    7. Domains for 3eyn:
      1. 2222653Domain d3eyna_: 3eyn A: [305333]
        automated match to d3daya_
        complexed with coa, mg, unk; mutant
      2. 2222654Domain d3eynb_: 3eyn B: [305334]
        automated match to d3daya_
        complexed with coa, mg, unk; mutant
    8. Domains for 3gpc:
      1. 2222651Domain d3gpca_: 3gpc A: [246333]
        automated match to d4eatb_
        complexed with coa, mg; mutant
      2. 2222652Domain d3gpcb_: 3gpc B: [246334]
        automated match to d4eatb_
        complexed with coa, mg; mutant
  7. 2222665Mycobacterium tuberculosis [TaxId:1773] [226299] (1 PDB entry)
  8. 2222667Mycobacterium tuberculosis [TaxId:83332] [311387] (1 PDB entry)
  9. 2222669Neotyphodium lolii [TaxId:73839] [311301] (1 PDB entry)
  10. 2222671Planktothrix agardhii [TaxId:1160] [274455] (3 PDB entries)
    1. Domain for 4d4i:
    2. Domain for 4d56:
    3. Domain for 4d57:
  11. 2222675Populus tomentosa [TaxId:118781] [225956] (3 PDB entries)
    1. Domain for 3a9u:
    2. Domain for 3a9v:
    3. Domain for 3ni2:
  12. 2222679Pseudomonas aeruginosa [TaxId:208964] [311371] (1 PDB entry)
  13. 2222681Rhodopseudomonas palustris [TaxId:1076] [189027] (8 PDB entries)
    1. Domains for 3ivr:
      1. 2222684Domain d3ivra1: 3ivr A:4-398 [178635]
        Other proteins in same PDB: d3ivra2, d3ivrb2
        automated match to d1t5dx_
        complexed with cl, gol
      2. 2222685Domain d3ivrb1: 3ivr B:4-397 [178636]
        Other proteins in same PDB: d3ivra2, d3ivrb2
        automated match to d1t5dx_
        complexed with cl, gol
    2. Domains for 4eat:
      1. 2222682Domain d4eata_: 4eat A: [234367]
        Other proteins in same PDB: d4eatb2
        automated match to d2v7ba_
        complexed with bez, edo, gol
      2. 2222683Domain d4eatb1: 4eat B:6-523 [234368]
        Other proteins in same PDB: d4eatb2
        automated match to d2v7ba_
        complexed with bez, edo, gol
    3. Domains for 4rlf:
      1. 2222692Domain d4rlfa_: 4rlf A: [277550]
        Other proteins in same PDB: d4rlfb2
        automated match to d4eatb_
        complexed with 3sk, 4ma, gol
      2. 2222693Domain d4rlfb1: 4rlf B:6-523 [277553]
        Other proteins in same PDB: d4rlfb2
        automated match to d4eatb_
        complexed with 3sk, 4ma, gol
    4. Domains for 4rlq:
      1. 2222686Domain d4rlqa_: 4rlq A: [277554]
        Other proteins in same PDB: d4rlqb2
        automated match to d4eatb_
        complexed with 3sk, gol
      2. 2222687Domain d4rlqb1: 4rlq B:6-523 [277555]
        Other proteins in same PDB: d4rlqb2
        automated match to d4eatb_
        complexed with 3sk, gol
    5. Domains for 4rm2:
      1. 2222696Domain d4rm2a_: 4rm2 A: [277556]
        Other proteins in same PDB: d4rm2b2
        automated match to d4eatb_
        complexed with 3u4
      2. 2222697Domain d4rm2b1: 4rm2 B:6-523 [277561]
        Other proteins in same PDB: d4rm2b2
        automated match to d4eatb_
        complexed with 3u4
    6. Domains for 4rm3:
      1. 2222694Domain d4rm3a_: 4rm3 A: [277564]
        Other proteins in same PDB: d4rm3b2
        automated match to d4eatb_
        complexed with foa
      2. 2222695Domain d4rm3b1: 4rm3 B:6-523 [277565]
        Other proteins in same PDB: d4rm3b2
        automated match to d4eatb_
        complexed with foa
    7. Domains for 4rmn:
      1. 2222690Domain d4rmna_: 4rmn A: [277562]
        Other proteins in same PDB: d4rmnb2
        automated match to d4eatb_
        complexed with c21, gol
      2. 2222691Domain d4rmnb1: 4rmn B:6-523 [277563]
        Other proteins in same PDB: d4rmnb2
        automated match to d4eatb_
        complexed with c21, gol
    8. Domains for 4zjz:
      1. 2222688Domain d4zjza_: 4zjz A: [277730]
        automated match to d4eatb_
        complexed with bez, gol, oob
      2. 2222689Domain d4zjzb_: 4zjz B: [277734]
        automated match to d4eatb_
        complexed with bez, gol, oob
  14. 2222698Rhodopseudomonas palustris [TaxId:258594] [226421] (4 PDB entries)
    1. Domains for 4fuq:
      1. 2222699Domain d4fuqa_: 4fuq A: [221539]
        automated match to d2qvzx_
        complexed with gol, so4
      2. 2222700Domain d4fuqb_: 4fuq B: [221540]
        automated match to d2qvzx_
        complexed with gol, so4
      3. 2222701Domain d4fuqc_: 4fuq C: [221541]
        automated match to d2qvzx_
        complexed with gol, so4
      4. 2222702Domain d4fuqd_: 4fuq D: [221542]
        automated match to d2qvzx_
        complexed with gol, so4
    2. Domain for 4fut:
    3. Domains for 4gxq:
      1. 2222705Domain d4gxqa_: 4gxq A: [222263]
        automated match to d2qvzx_
        complexed with atp, co3, mg
      2. 2222706Domain d4gxqb_: 4gxq B: [222264]
        automated match to d2qvzx_
        complexed with atp, co3, mg
      3. 2222707Domain d4gxqc_: 4gxq C: [222265]
        automated match to d2qvzx_
        complexed with atp, co3, mg
    4. Domain for 4gxr:
  15. 2222708Staphylococcus aureus [TaxId:158879] [311300] (1 PDB entry)
  16. 2222712Stigmatella aurantiaca [TaxId:41] [279348] (1 PDB entry)
  17. 2222715Streptococcus pyogenes [TaxId:160490] [267852] (1 PDB entry)
  18. 2222720Streptococcus pyogenes [TaxId:301450] [267851] (1 PDB entry)
  19. 2222723Streptomyces platensis [TaxId:684832] [278375] (3 PDB entries)
    1. Domains for 5e7q:
      1. 2222724Domain d5e7qa1: 5e7q A:2-513 [278376]
        Other proteins in same PDB: d5e7qa2, d5e7qb2
        automated match to d3vnra_
        complexed with gol, so4
      2. 2222725Domain d5e7qb1: 5e7q B:2-513 [278378]
        Other proteins in same PDB: d5e7qa2, d5e7qb2
        automated match to d3vnra_
        complexed with gol, so4
    2. Domains for 5upq:
      1. 2286925Domain d5upqb_: 5upq B: [330226]
        Other proteins in same PDB: d5upqa2
        automated match to d3vnra_
        complexed with 8jj, cl, gol, so4
      2. 2286979Domain d5upqa1: 5upq A:2-513 [330280]
        Other proteins in same PDB: d5upqa2
        automated match to d3vnra_
        complexed with 8jj, cl, gol, so4
    3. Domain for 5upt:
  20. 2222726Streptomyces sp. [TaxId:1931] [256140] (5 PDB entries)
    1. Domain for 3vnq:
    2. Domain for 3vnr:
    3. Domain for 3vns:
    4. Domains for 5apb:
      1. 2280266Domain d5apbb_: 5apb B: [323567]
        automated match to d3dhva_
        complexed with amp, atp, mg, thr
      2. 2280557Domain d5apba_: 5apb A: [323858]
        automated match to d3dhva_
        complexed with amp, atp, mg, thr
    5. Domains for 5apl:
      1. 2280226Domain d5apla_: 5apl A: [323527]
        automated match to d3dhva_
        complexed with act
      2. 2280392Domain d5aplb_: 5apl B: [323693]
        automated match to d3dhva_
        complexed with act
  21. 2273880Nicotiana tabacum [TaxId:4097] [317181] (5 PDB entries)
    1. Domains for 5bsm:
      1. 2273902Domain d5bsmb_: 5bsm B: [317203]
        automated match to d3a9ua_
        complexed with atp, mg
      2. 2273932Domain d5bsma_: 5bsm A: [317233]
        automated match to d3a9ua_
        complexed with atp, mg
    2. Domain for 5bsr:
    3. Domain for 5bsu:
    4. Domain for 5bsv:
    5. Domains for 5u95:
      1. 2288818Domain d5u95b_: 5u95 B: [332119]
        automated match to d3a9ua_
        complexed with ca
      2. 2288976Domain d5u95c_: 5u95 C: [332277]
        automated match to d3a9ua_
        complexed with ca
      3. 2288995Domain d5u95d_: 5u95 D: [332296]
        automated match to d3a9ua_
        complexed with ca
  22. 2288323Streptomyces sp. [TaxId:1265536] [331624] (1 PDB entry)

More info for Protein automated matches from e.23.1.0: automated matches

Timeline for Protein automated matches from e.23.1.0: automated matches: