Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2217451Class e: Multi-domain proteins (alpha and beta) [56572] (69 folds)
  3. 2222543Fold e.23: Acetyl-CoA synthetase-like [56800] (1 superfamily)
    4 domains: (1&2) duplication: share the same alpha/beta fold; (3) beta-barrel; (4) alpha+beta
  4. 2222544Superfamily e.23.1: Acetyl-CoA synthetase-like [56801] (2 families) (S)
  5. 2222620Family e.23.1.0: automated matches [191594] (1 protein)
    not a true family
  6. 2222621Protein automated matches [191083] (23 species)
    not a true protein

Species:

  1. 2222622Acinetobacter baumannii [TaxId:557601] [189484] (5 PDB entries)
    1. Domains for 3o82:
      1. 2222631Domain d3o82a_: 3o82 A: [182863]
        automated match to d1md9a_
        complexed with ca, hp8
      2. 2222632Domain d3o82b_: 3o82 B: [182864]
        automated match to d1md9a_
        complexed with ca, hp8
    2. Domains for 3o83:
      1. 2222623Domain d3o83a_: 3o83 A: [182865]
        automated match to d1md9a_
        complexed with ca, ixn, mpd, mrd
      2. 2222624Domain d3o83b_: 3o83 B: [182866]
        automated match to d1md9a_
        complexed with ca, ixn, mpd, mrd
    3. Domains for 3o84:
      1. 2222627Domain d3o84a_: 3o84 A: [182867]
        automated match to d1md9a_
        complexed with ca, htj, mpd, mrd, pge
      2. 2222628Domain d3o84b_: 3o84 B: [182868]
        automated match to d1md9a_
        complexed with ca, htj, mpd, mrd, pge
    4. Domains for 3u16:
      1. 2222625Domain d3u16a_: 3u16 A: [217139]
        automated match to d3o83a_
        complexed with ca, h89, mpd, mrd
      2. 2222626Domain d3u16b_: 3u16 B: [217140]
        automated match to d3o83b_
        complexed with ca, h89, mpd, mrd
    5. Domains for 3u17:
      1. 2222629Domain d3u17a_: 3u17 A: [217141]
        automated match to d3o83a_
        complexed with ca, h90, mpd, mrd
      2. 2222630Domain d3u17b_: 3u17 B: [217142]
        automated match to d3o83b_
        complexed with ca, h90, mpd, mrd
  2. 2222633Bacillus cereus [TaxId:226900] [267827] (4 PDB entries)
    1. Domain for 3dhv:
    2. Domain for 3fcc:
    3. Domain for 3fce:
    4. Domain for 4pzp:
  3. 2222638Bacillus subtilis [TaxId:1423] [311280] (2 PDB entries)
    1. Domain for 3e7w:
    2. Domain for 3e7x:
  4. 2222641Bacillus subtilis [TaxId:224308] [276264] (5 PDB entries)
    1. Domains for 5buq:
      1. 2222642Domain d5buqa_: 5buq A: [301871]
        automated match to d5buqb_
        complexed with act, ca
      2. 2222643Domain d5buqb_: 5buq B: [276266]
        automated match to d3fcca_
        complexed with act, ca
    2. Domain for 5bur:
    3. Domain for 5bus:
    4. Domains for 5x8f:
      1. 2291947Domain d5x8fc_: 5x8f C: [335248]
        automated match to d5buqb_
        complexed with amp, ca, mg, na, peg, s0n; mutant
      2. 2291950Domain d5x8fa_: 5x8f A: [335251]
        automated match to d5buqb_
        complexed with amp, ca, mg, na, peg, s0n; mutant
      3. 2291974Domain d5x8fb_: 5x8f B: [335275]
        automated match to d5buqb_
        complexed with amp, ca, mg, na, peg, s0n; mutant
      4. 2291987Domain d5x8fd_: 5x8f D: [335288]
        automated match to d5buqb_
        complexed with amp, ca, mg, na, peg, s0n; mutant
    5. Domains for 5x8g:
      1. 2291949Domain d5x8gc_: 5x8g C: [335250]
        automated match to d5buqb_
        complexed with ca, mg, na, peg, s0n; mutant
      2. 2291957Domain d5x8gb_: 5x8g B: [335258]
        automated match to d5buqb_
        complexed with ca, mg, na, peg, s0n; mutant
      3. 2291989Domain d5x8ga_: 5x8g A: [335290]
        automated match to d5buqb_
        complexed with ca, mg, na, peg, s0n; mutant
      4. 2292004Domain d5x8gd_: 5x8g D: [335305]
        automated match to d5buqb_
        complexed with ca, mg, na, peg, s0n; mutant
  5. 2222646Burkholderia xenovorans [TaxId:266265] [225346] (1 PDB entry)
  6. 2222649Human (Homo sapiens) [TaxId:9606] [255628] (8 PDB entries)
    1. Domains for 2vze:
      1. 2222657Domain d2vzea_: 2vze A: [243959]
        automated match to d4eatb_
        complexed with amp, mg; mutant
      2. 2222658Domain d2vzeb_: 2vze B: [243960]
        automated match to d4eatb_
        complexed with amp, mg; mutant
      3. 2222659Domain d2vzec_: 2vze C: [243961]
        automated match to d4eatb_
        complexed with amp, mg; mutant
    2. Domains for 2wd9:
      1. 2222662Domain d2wd9a_: 2wd9 A: [244116]
        automated match to d4eata_
        complexed with ibp, mg; mutant
      2. 2222663Domain d2wd9b_: 2wd9 B: [244117]
        automated match to d4eata_
        complexed with ibp, mg; mutant
      3. 2222664Domain d2wd9c_: 2wd9 C: [244118]
        automated match to d4eata_
        complexed with ibp, mg; mutant
    3. Domain for 3b7w:
    4. Domain for 3c5e:
    5. Domain for 3day:
    6. Domains for 3eq6:
      1. 2222660Domain d3eq6a_: 3eq6 A: [245897]
        automated match to d4eatb_
        complexed with amp, bco; mutant
      2. 2222661Domain d3eq6b_: 3eq6 B: [245898]
        automated match to d4eatb_
        complexed with amp, bco; mutant
    7. Domains for 3eyn:
      1. 2222653Domain d3eyna_: 3eyn A: [305333]
        automated match to d3daya_
        complexed with coa, mg, unk; mutant
      2. 2222654Domain d3eynb_: 3eyn B: [305334]
        automated match to d3daya_
        complexed with coa, mg, unk; mutant
    8. Domains for 3gpc:
      1. 2222651Domain d3gpca_: 3gpc A: [246333]
        automated match to d4eatb_
        complexed with coa, mg; mutant
      2. 2222652Domain d3gpcb_: 3gpc B: [246334]
        automated match to d4eatb_
        complexed with coa, mg; mutant
  7. 2222665Mycobacterium tuberculosis [TaxId:1773] [226299] (1 PDB entry)
  8. 2222667Mycobacterium tuberculosis [TaxId:83332] [311387] (1 PDB entry)
  9. 2222669Neotyphodium lolii [TaxId:73839] [311301] (1 PDB entry)
  10. 2222671Planktothrix agardhii [TaxId:1160] [274455] (3 PDB entries)
    1. Domain for 4d4i:
    2. Domain for 4d56:
    3. Domain for 4d57:
  11. 2222675Populus tomentosa [TaxId:118781] [225956] (3 PDB entries)
    1. Domain for 3a9u:
    2. Domain for 3a9v:
    3. Domain for 3ni2:
  12. 2222679Pseudomonas aeruginosa [TaxId:208964] [311371] (1 PDB entry)
  13. 2222681Rhodopseudomonas palustris [TaxId:1076] [189027] (8 PDB entries)
    1. Domains for 3ivr:
      1. 2222684Domain d3ivra1: 3ivr A:4-398 [178635]
        Other proteins in same PDB: d3ivra2, d3ivrb2
        automated match to d1t5dx_
        complexed with cl, gol
      2. 2222685Domain d3ivrb1: 3ivr B:4-397 [178636]
        Other proteins in same PDB: d3ivra2, d3ivrb2
        automated match to d1t5dx_
        complexed with cl, gol
    2. Domains for 4eat:
      1. 2222682Domain d4eata_: 4eat A: [234367]
        Other proteins in same PDB: d4eatb2
        automated match to d2v7ba_
        complexed with bez, edo, gol
      2. 2222683Domain d4eatb1: 4eat B:6-523 [234368]
        Other proteins in same PDB: d4eatb2
        automated match to d2v7ba_
        complexed with bez, edo, gol
    3. Domains for 4rlf:
      1. 2222692Domain d4rlfa_: 4rlf A: [277550]
        Other proteins in same PDB: d4rlfb2
        automated match to d4eatb_
        complexed with 3sk, 4ma, gol
      2. 2222693Domain d4rlfb1: 4rlf B:6-523 [277553]
        Other proteins in same PDB: d4rlfb2
        automated match to d4eatb_
        complexed with 3sk, 4ma, gol
    4. Domains for 4rlq:
      1. 2222686Domain d4rlqa_: 4rlq A: [277554]
        Other proteins in same PDB: d4rlqb2
        automated match to d4eatb_
        complexed with 3sk, gol
      2. 2222687Domain d4rlqb1: 4rlq B:6-523 [277555]
        Other proteins in same PDB: d4rlqb2
        automated match to d4eatb_
        complexed with 3sk, gol
    5. Domains for 4rm2:
      1. 2222696Domain d4rm2a_: 4rm2 A: [277556]
        Other proteins in same PDB: d4rm2b2
        automated match to d4eatb_
        complexed with 3u4
      2. 2222697Domain d4rm2b1: 4rm2 B:6-523 [277561]
        Other proteins in same PDB: d4rm2b2
        automated match to d4eatb_
        complexed with 3u4
    6. Domains for 4rm3:
      1. 2222694Domain d4rm3a_: 4rm3 A: [277564]
        Other proteins in same PDB: d4rm3b2
        automated match to d4eatb_
        complexed with foa
      2. 2222695Domain d4rm3b1: 4rm3 B:6-523 [277565]
        Other proteins in same PDB: d4rm3b2
        automated match to d4eatb_
        complexed with foa
    7. Domains for 4rmn:
      1. 2222690Domain d4rmna_: 4rmn A: [277562]
        Other proteins in same PDB: d4rmnb2
        automated match to d4eatb_
        complexed with c21, gol
      2. 2222691Domain d4rmnb1: 4rmn B:6-523 [277563]
        Other proteins in same PDB: d4rmnb2
        automated match to d4eatb_
        complexed with c21, gol
    8. Domains for 4zjz:
      1. 2222688Domain d4zjza_: 4zjz A: [277730]
        automated match to d4eatb_
        complexed with bez, gol, oob
      2. 2222689Domain d4zjzb_: 4zjz B: [277734]
        automated match to d4eatb_
        complexed with bez, gol, oob
  14. 2222698Rhodopseudomonas palustris [TaxId:258594] [226421] (4 PDB entries)
    1. Domains for 4fuq:
      1. 2222699Domain d4fuqa_: 4fuq A: [221539]
        automated match to d2qvzx_
        complexed with gol, so4
      2. 2222700Domain d4fuqb_: 4fuq B: [221540]
        automated match to d2qvzx_
        complexed with gol, so4
      3. 2222701Domain d4fuqc_: 4fuq C: [221541]
        automated match to d2qvzx_
        complexed with gol, so4
      4. 2222702Domain d4fuqd_: 4fuq D: [221542]
        automated match to d2qvzx_
        complexed with gol, so4
    2. Domain for 4fut:
    3. Domains for 4gxq:
      1. 2222705Domain d4gxqa_: 4gxq A: [222263]
        automated match to d2qvzx_
        complexed with atp, co3, mg
      2. 2222706Domain d4gxqb_: 4gxq B: [222264]
        automated match to d2qvzx_
        complexed with atp, co3, mg
      3. 2222707Domain d4gxqc_: 4gxq C: [222265]
        automated match to d2qvzx_
        complexed with atp, co3, mg
    4. Domain for 4gxr:
  15. 2222708Staphylococcus aureus [TaxId:158879] [311300] (1 PDB entry)
  16. 2222712Stigmatella aurantiaca [TaxId:41] [279348] (1 PDB entry)
  17. 2222715Streptococcus pyogenes [TaxId:160490] [267852] (1 PDB entry)
  18. 2222720Streptococcus pyogenes [TaxId:301450] [267851] (1 PDB entry)
  19. 2222723Streptomyces platensis [TaxId:684832] [278375] (3 PDB entries)
    1. Domains for 5e7q:
      1. 2222724Domain d5e7qa1: 5e7q A:2-513 [278376]
        Other proteins in same PDB: d5e7qa2, d5e7qb2
        automated match to d3vnra_
        complexed with gol, so4
      2. 2222725Domain d5e7qb1: 5e7q B:2-513 [278378]
        Other proteins in same PDB: d5e7qa2, d5e7qb2
        automated match to d3vnra_
        complexed with gol, so4
    2. Domains for 5upq:
      1. 2286925Domain d5upqb_: 5upq B: [330226]
        Other proteins in same PDB: d5upqa2
        automated match to d3vnra_
        complexed with 8jj, cl, gol, so4
      2. 2286979Domain d5upqa1: 5upq A:2-513 [330280]
        Other proteins in same PDB: d5upqa2
        automated match to d3vnra_
        complexed with 8jj, cl, gol, so4
    3. Domain for 5upt:
  20. 2222726Streptomyces sp. [TaxId:1931] [256140] (7 PDB entries)
    1. Domain for 3vnq:
    2. Domain for 3vnr:
    3. Domain for 3vns:
    4. Domains for 5apb:
      1. 2280266Domain d5apbb_: 5apb B: [323567]
        automated match to d3dhva_
        complexed with amp, atp, mg, thr
      2. 2280557Domain d5apba_: 5apb A: [323858]
        automated match to d3dhva_
        complexed with amp, atp, mg, thr
    5. Domains for 5apl:
      1. 2280226Domain d5apla_: 5apl A: [323527]
        automated match to d3dhva_
        complexed with act
      2. 2280392Domain d5aplb_: 5apl B: [323693]
        automated match to d3dhva_
        complexed with act
    6. Domains for 5n9w:
      1. 2293720Domain d5n9wb_: 5n9w B: [337021]
        automated match to d3dhva_
        complexed with act
      2. 2293818Domain d5n9wa_: 5n9w A: [337119]
        automated match to d3dhva_
        complexed with act
    7. Domains for 5n9x:
      1. 2293748Domain d5n9xa_: 5n9x A: [337049]
        automated match to d3dhva_
        complexed with 8qn, atp, mg, thr
      2. 2293787Domain d5n9xb_: 5n9x B: [337088]
        automated match to d3dhva_
        complexed with 8qn, atp, mg, thr
  21. 2273880Nicotiana tabacum [TaxId:4097] [317181] (5 PDB entries)
    1. Domains for 5bsm:
      1. 2273902Domain d5bsmb_: 5bsm B: [317203]
        automated match to d3a9ua_
        complexed with atp, mg
      2. 2273932Domain d5bsma_: 5bsm A: [317233]
        automated match to d3a9ua_
        complexed with atp, mg
    2. Domain for 5bsr:
    3. Domain for 5bsu:
    4. Domain for 5bsv:
    5. Domains for 5u95:
      1. 2288818Domain d5u95b_: 5u95 B: [332119]
        automated match to d3a9ua_
        complexed with ca
      2. 2288976Domain d5u95c_: 5u95 C: [332277]
        automated match to d3a9ua_
        complexed with ca
      3. 2288995Domain d5u95d_: 5u95 D: [332296]
        automated match to d3a9ua_
        complexed with ca
  22. 2288323Streptomyces sp. [TaxId:1265536] [331624] (1 PDB entry)
  23. 2295789Dinoroseobacter shibae [TaxId:398580] [339090] (1 PDB entry)

More info for Protein automated matches from e.23.1.0: automated matches

Timeline for Protein automated matches from e.23.1.0: automated matches: