Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 3000942Fold d.167: Peptide deformylase [56419] (1 superfamily)
    alpha-beta(5)-alpha; 3 layers: a/b/a; meander beta-sheet wraps around the C-terminal alpha-helix
  4. 3000943Superfamily d.167.1: Peptide deformylase [56420] (2 families) (S)
    nickel-dependent enzyme
  5. 3001128Family d.167.1.0: automated matches [191587] (1 protein)
    not a true family
  6. 3001129Protein automated matches [191055] (20 species)
    not a true protein

Species:

  1. 3001130Acinetobacter baumannii [TaxId:470] [380329] (6 PDB entries)
    1. Domains for 6jes:
      1. 3001135Domain d6jesa_: 6jes A: [380349]
        automated match to d2defa_
        complexed with gol, zn
      2. 3001136Domain d6jesb_: 6jes B: [380337]
        automated match to d2defa_
        complexed with gol, zn
    2. Domains for 6jf3:
      1. 3001143Domain d6jf3a_: 6jf3 A: [380343]
        automated match to d2defa_
        complexed with bb2, zn
      2. 3001144Domain d6jf3b_: 6jf3 B: [380359]
        automated match to d2defa_
        complexed with bb2, zn
    3. Domains for 6jf4:
      1. 3001137Domain d6jf4a_: 6jf4 A: [380345]
        automated match to d2defa_
        complexed with k1u, zn
      2. 3001138Domain d6jf4b_: 6jf4 B: [380397]
        automated match to d2defa_
        complexed with k1u, zn
    4. Domains for 6jf5:
      1. 3001141Domain d6jf5a_: 6jf5 A: [380330]
        automated match to d2defa_
        complexed with k2u, zn
      2. 3001142Domain d6jf5b_: 6jf5 B: [380335]
        automated match to d2defa_
        complexed with k2u, zn
    5. Domains for 6jf7:
      1. 3001139Domain d6jf7a_: 6jf7 A: [380374]
        automated match to d2defa_
        complexed with k3u, zn
      2. 3001140Domain d6jf7b_: 6jf7 B: [380393]
        automated match to d2defa_
        complexed with k3u, zn
    6. Domains for 6jf8:
      1. 3001131Domain d6jf8a_: 6jf8 A: [380402]
        automated match to d2defa_
        complexed with lhy, zn
      2. 3001132Domain d6jf8b_: 6jf8 B: [380368]
        automated match to d2defa_
        complexed with lhy, zn
      3. 3001133Domain d6jf8c_: 6jf8 C: [380388]
        automated match to d2defa_
        complexed with lhy, zn
      4. 3001134Domain d6jf8d_: 6jf8 D: [380386]
        automated match to d2defa_
        complexed with lhy, zn
  2. 3001145Bacillus cereus [TaxId:1396] [225021] (2 PDB entries)
    1. Domain for 1ws0:
    2. Domain for 1ws1:
  3. 3001148Burkholderia ambifaria [TaxId:396596] [314970] (1 PDB entry)
  4. 3001150Burkholderia ambifaria [TaxId:398577] [314942] (1 PDB entry)
  5. 3001153Burkholderia multivorans [TaxId:395019] [315513] (2 PDB entries)
    1. Domain for 5j46:
    2. Domain for 5t8z:
  6. 3001156Burkholderia xenovorans [TaxId:266265] [319599] (1 PDB entry)
  7. 3001161Ehrlichia chaffeensis [TaxId:205920] [189753] (2 PDB entries)
    1. Domains for 3oca:
      1. 3001163Domain d3ocaa_: 3oca A: [214301]
        automated match to d3u04a_
        complexed with cl, zn
      2. 3001164Domain d3ocab_: 3oca B: [214302]
        automated match to d3u04a_
        complexed with cl, zn
    2. Domain for 3u04:
  8. 3001165Escherichia coli K-12 [TaxId:83333] [226789] (2 PDB entries)
    1. Domain for 2w3t:
    2. Domain for 2w3u:
  9. 3001168Helicobacter pylori [TaxId:210] [255153] (5 PDB entries)
    1. Domain for 2ew5:
    2. Domain for 2ew6:
    3. Domain for 2ew7:
    4. Domain for 4e9a:
    5. Domain for 4e9b:
  10. 3001174Human (Homo sapiens) [TaxId:9606] [225635] (2 PDB entries)
    1. Domains for 3g5k:
      1. 3001175Domain d3g5ka1: 3g5k A:6-185 [210397]
        Other proteins in same PDB: d3g5ka2, d3g5kb2, d3g5kc2, d3g5kd2
        automated match to d1vezb_
        complexed with bb2, co
      2. 3001176Domain d3g5kb1: 3g5k B:6-185 [210398]
        Other proteins in same PDB: d3g5ka2, d3g5kb2, d3g5kc2, d3g5kd2
        automated match to d1vezb_
        complexed with bb2, co
      3. 3001177Domain d3g5kc1: 3g5k C:6-185 [210399]
        Other proteins in same PDB: d3g5ka2, d3g5kb2, d3g5kc2, d3g5kd2
        automated match to d1vezb_
        complexed with bb2, co
      4. 3001178Domain d3g5kd1: 3g5k D:6-185 [210400]
        Other proteins in same PDB: d3g5ka2, d3g5kb2, d3g5kc2, d3g5kd2
        automated match to d1vezb_
        complexed with bb2, co
    2. Domains for 3g5p:
      1. 3001179Domain d3g5pa1: 3g5p A:6-185 [210405]
        Other proteins in same PDB: d3g5pa2, d3g5pb2, d3g5pc2, d3g5pd2
        automated match to d1vezb_
        complexed with co, po4
      2. 3001180Domain d3g5pb1: 3g5p B:6-185 [210406]
        Other proteins in same PDB: d3g5pa2, d3g5pb2, d3g5pc2, d3g5pd2
        automated match to d1vezb_
        complexed with co, po4
      3. 3001181Domain d3g5pc1: 3g5p C:6-185 [210407]
        Other proteins in same PDB: d3g5pa2, d3g5pb2, d3g5pc2, d3g5pd2
        automated match to d1vezb_
        complexed with co, po4
      4. 3001182Domain d3g5pd1: 3g5p D:6-185 [210408]
        Other proteins in same PDB: d3g5pa2, d3g5pb2, d3g5pc2, d3g5pd2
        automated match to d1vezb_
        complexed with co, po4
  11. 3001183Legionella pneumophila [TaxId:272624] [350026] (1 PDB entry)
  12. 3001185Legionella pneumophila [TaxId:446] [350187] (1 PDB entry)
  13. 3001190Mycobacterium tuberculosis [TaxId:1773] [255809] (1 PDB entry)
  14. 3001192Paraburkholderia xenovorans [TaxId:266265] [333971] (1 PDB entry)
  15. 3001197Pseudomonas aeruginosa [TaxId:287] [380338] (6 PDB entries)
    1. Domains for 6jf9:
      1. 3001198Domain d6jf9a_: 6jf9 A: [380339]
        automated match to d5kobc_
        complexed with gol, ni
      2. 3001199Domain d6jf9b_: 6jf9 B: [380348]
        automated match to d5kobc_
        complexed with gol, ni
    2. Domains for 6jfc:
      1. 3001200Domain d6jfca_: 6jfc A: [380347]
        automated match to d5kobc_
        complexed with bb2, ni
      2. 3001201Domain d6jfcb_: 6jfc B: [380350]
        automated match to d5kobc_
        complexed with bb2, ni
    3. Domains for 6jfd:
      1. 3001208Domain d6jfda_: 6jfd A: [380341]
        automated match to d5kobc_
        complexed with k1u, ni
      2. 3001209Domain d6jfdb_: 6jfd B: [380356]
        automated match to d5kobc_
        complexed with k1u, ni
      3. 3001210Domain d6jfdc_: 6jfd C: [380342]
        automated match to d5kobc_
        complexed with k1u, ni
      4. 3001211Domain d6jfdd_: 6jfd D: [380414]
        automated match to d5kobc_
        complexed with k1u, ni
    4. Domains for 6jfe:
      1. 3001204Domain d6jfea_: 6jfe A: [380361]
        automated match to d5kobc_
        complexed with k3u, ni
      2. 3001205Domain d6jfeb_: 6jfe B: [380382]
        automated match to d5kobc_
        complexed with k3u, ni
    5. Domains for 6jff:
      1. 3001206Domain d6jffa_: 6jff A: [380398]
        automated match to d5kobc_
        complexed with k3u, ni
      2. 3001207Domain d6jffb_: 6jff B: [380371]
        automated match to d5kobc_
        complexed with k3u, ni
    6. Domains for 6jfn:
      1. 3001202Domain d6jfna_: 6jfn A: [381678]
        automated match to d5kobc_
        complexed with lhy, ni
      2. 3001203Domain d6jfnb_: 6jfn B: [381645]
        automated match to d5kobc_
        complexed with lhy, ni
  16. 3001212Synechococcus elongatus [TaxId:269084] [226557] (2 PDB entries)
    1. Domains for 4dr8:
      1. 3001213Domain d4dr8a_: 4dr8 A: [234331]
        automated match to d4dr8b_
        complexed with cl, edo, fmt, zn
      2. 3001214Domain d4dr8b_: 4dr8 B: [219962]
        automated match to d1veza_
        complexed with cl, edo, fmt, zn
      3. 3001215Domain d4dr8c_: 4dr8 C: [219963]
        automated match to d1veza_
        complexed with cl, edo, fmt, zn
      4. 3001216Domain d4dr8d_: 4dr8 D: [219964]
        automated match to d1veza_
        complexed with cl, edo, fmt, zn
    2. Domains for 4dr9:
      1. 3001217Domain d4dr9a_: 4dr9 A: [234332]
        automated match to d4dr8b_
        complexed with bb2, br, zn
      2. 3001218Domain d4dr9b_: 4dr9 B: [219965]
        automated match to d1veza_
        complexed with bb2, br, zn
      3. 3001219Domain d4dr9c_: 4dr9 C: [219966]
        automated match to d1veza_
        complexed with bb2, br, zn
      4. 3001220Domain d4dr9d_: 4dr9 D: [219967]
        automated match to d1veza_
        complexed with bb2, br, zn
  17. 3001221Synechococcus phage [TaxId:445686] [194160] (2 PDB entries)
    1. Domain for 3uwa:
    2. Domain for 3uwb:
  18. 3001224Thale cress (Arabidopsis thaliana) [TaxId:3702] [230479] (5 PDB entries)
    1. Domains for 1zxz:
      1. 3001229Domain d1zxza1: 1zxz A:2-190 [230481]
        Other proteins in same PDB: d1zxza2, d1zxzb2
        automated match to d3g5ka_
        complexed with zn
      2. 3001230Domain d1zxzb1: 1zxz B:2-190 [230480]
        Other proteins in same PDB: d1zxza2, d1zxzb2
        automated match to d3g5ka_
        complexed with zn
    2. Domains for 1zy0:
      1. 3001233Domain d1zy0a1: 1zy0 A:2-190 [230482]
        Other proteins in same PDB: d1zy0a2, d1zy0b2
        automated match to d3g5ka_
        complexed with zn
      2. 3001234Domain d1zy0b1: 1zy0 B:2-190 [230483]
        Other proteins in same PDB: d1zy0a2, d1zy0b2
        automated match to d3g5ka_
        complexed with zn
    3. Domains for 1zy1:
      1. 3001231Domain d1zy1a1: 1zy1 A:2-190 [241178]
        Other proteins in same PDB: d1zy1a2, d1zy1b2
        automated match to d4je6a_
        complexed with zn
      2. 3001232Domain d1zy1b1: 1zy1 B:2-190 [241179]
        Other proteins in same PDB: d1zy1a2, d1zy1b2
        automated match to d4je6a_
        complexed with zn
    4. Domains for 4je6:
      1. 3001225Domain d4je6a1: 4je6 A:2-190 [237949]
        Other proteins in same PDB: d4je6a2, d4je6b2
        automated match to d4je7a_
        complexed with zn
      2. 3001226Domain d4je6b1: 4je6 B:3-190 [237948]
        Other proteins in same PDB: d4je6a2, d4je6b2
        automated match to d4je7a_
        complexed with zn
    5. Domains for 4je7:
      1. 3001227Domain d4je7a1: 4je7 A:2-190 [237167]
        Other proteins in same PDB: d4je7a2, d4je7b2
        automated match to d3g5ka_
        complexed with bb2, zn
      2. 3001228Domain d4je7b1: 4je7 B:3-190 [237168]
        Other proteins in same PDB: d4je7a2, d4je7b2
        automated match to d3g5ka_
        complexed with bb2, zn
  19. 3001235Vibrio cholerae [TaxId:666] [189665] (1 PDB entry)
  20. 3001238Xanthomonas oryzae [TaxId:64187] [188927] (16 PDB entries)
    1. Domain for 4nt8:
    2. Domain for 5cpd:
    3. Domain for 5cvk:
    4. Domain for 5cvp:
    5. Domain for 5cvq:
    6. Domain for 5cwx:
    7. Domain for 5cwy:
    8. Domain for 5cx0:
    9. Domain for 5cxj:
    10. Domain for 5cy7:
    11. Domain for 5cy8:
    12. Domain for 5e5d:
    13. Domain for 6ikt:
    14. Domain for 6iky:
    15. Domain for 6il0:
    16. Domain for 6il2:

More info for Protein automated matches from d.167.1.0: automated matches

Timeline for Protein automated matches from d.167.1.0: automated matches: