SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2143226Fold c.92: Chelatase-like [53799] (3 superfamilies)
    duplication: tandem repeat of two domains; 3 layers (a/b/a); parallel beta-sheet of 4 strands, order 2134
  4. 2143333Superfamily c.92.2: "Helical backbone" metal receptor [53807] (5 families) (S)
    contains a long alpha helical insertion in the interdomain linker
  5. 2143341Family c.92.2.2: TroA-like [53811] (6 protein domains)
  6. 2143368Protein automated matches [191053] (5 species)
    not a true protein

Species:

  1. 2143369Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] [189842] (7 PDB entries)
    1. Domains for 3zk7:
      1. 2143376Domain d3zk7a_: 3zk7 A: [228905]
        automated match to d3ztta_
        complexed with trs
      2. 2143377Domain d3zk7b_: 3zk7 B: [235910]
        automated match to d3zk7a_
        complexed with trs
    2. Domains for 3zk8:
      1. 2143374Domain d3zk8a_: 3zk8 A: [228904]
        automated match to d3ztta_
        complexed with trs
      2. 2143375Domain d3zk8b_: 3zk8 B: [235909]
        automated match to d3zk8a_
        complexed with trs
    3. Domains for 3zk9:
      1. 2143370Domain d3zk9a_: 3zk9 A: [228906]
        automated match to d3ztta_
        complexed with trs
      2. 2143371Domain d3zk9b_: 3zk9 B: [228907]
        automated match to d3ztta_
        complexed with trs
    4. Domains for 3zka:
      1. 2143372Domain d3zkaa_: 3zka A: [235912]
        automated match to d3zk9a_
        complexed with mn, trs
      2. 2143373Domain d3zkab_: 3zka B: [235911]
        automated match to d3zk9a_
        complexed with mn, trs
    5. Domains for 3ztt:
      1. 2143382Domain d3ztta_: 3ztt A: [186566]
        automated match to d1psza_
        complexed with mn
      2. 2143383Domain d3zttb_: 3ztt B: [186567]
        automated match to d1psza_
        complexed with mn
      3. 2143384Domain d3zttc_: 3ztt C: [186568]
        automated match to d1psza_
        complexed with mn
      4. 2143385Domain d3zttd_: 3ztt D: [186569]
        automated match to d1psza_
        complexed with mn
    6. Domains for 4uto:
      1. 2143378Domain d4utoa_: 4uto A: [269937]
        automated match to d1psza_
        complexed with cd, trs
      2. 2143379Domain d4utob_: 4uto B: [269936]
        automated match to d1psza_
        complexed with cd, trs
    7. Domains for 4utp:
      1. 2143380Domain d4utpa1: 4utp A:32-309 [264005]
        Other proteins in same PDB: d4utpa2, d4utpb2
        automated match to d1psza_
        complexed with cd
      2. 2143381Domain d4utpb1: 4utp B:32-309 [259043]
        Other proteins in same PDB: d4utpa2, d4utpb2
        automated match to d1psza_
        complexed with cd
  2. 2143386Streptococcus pyogenes [TaxId:301447] [188912] (1 PDB entry)
  3. 2143388Synechocystis sp. [TaxId:1143] [225291] (2 PDB entries)
    1. Domain for 2ov1:
    2. Domain for 2ov3:
  4. 2286203Escherichia coli [TaxId:83333] [329504] (3 PDB entries)
    1. Domains for 5m29:
      1. 2286204Domain d5m29b_: 5m29 B: [329505]
        automated match to d1n2za_
        complexed with cby, cyn, gol
      2. 2286269Domain d5m29a_: 5m29 A: [329570]
        automated match to d1n2za_
        complexed with cby, cyn, gol
    2. Domains for 5m34:
      1. 2287129Domain d5m34a_: 5m34 A: [330430]
        Other proteins in same PDB: d5m34b2
        automated match to d1n2za_
        complexed with cby, cyn, gol; mutant
      2. 2287211Domain d5m34b1: 5m34 B:22-265 [330512]
        Other proteins in same PDB: d5m34b2
        automated match to d1n2za_
        complexed with cby, cyn, gol; mutant
    3. Domains for 5m3b:
      1. 2287088Domain d5m3bb1: 5m3b B:22-266 [330389]
        Other proteins in same PDB: d5m3bb2
        automated match to d1n2za_
        complexed with cby, cyn, gol; mutant
      2. 2287125Domain d5m3ba_: 5m3b A: [330426]
        Other proteins in same PDB: d5m3bb2
        automated match to d1n2za_
        complexed with cby, cyn, gol; mutant
  5. 2287110Escherichia coli [TaxId:562] [330411] (1 PDB entry)

More info for Protein automated matches from c.92.2.2: TroA-like

Timeline for Protein automated matches from c.92.2.2: TroA-like: